RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SLC7A8Q9UHI5 535 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 A0A1B0GV50 99 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 C20orf202A1L168 122 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 XPNPEP2O43895 674 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 NUDT17P0C025 328 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 ENDOUP21128 410 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 LEPRP48357 1165 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 CLRN1P58418 232 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 MVKQ03426 396 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 SNTA1Q13424 505 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 LRRC46Q96FV0 321 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 UROC1Q96N76 676 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 C17orf62Q9BQA9 187 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 GHRLQ9UBU3 117 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 ACSL5Q9ULC5 683 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 MED14O60244 1454 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 PIP5K1BO14986 540 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 CLEC3AO75596 197 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 MT-ND5P03915 603 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 CD3GP09693 182 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 NPTX1Q15818 432 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 FAM183BPQ6ZVS7 135 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 PXKQ7Z7A4 578 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 RPLP0P6Q8NHW5 317 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 CNTNAP3BQ96NU0 1288 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 USB1Q9BQ65 265 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 ARL6Q9H0F7 186 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 COL6A2P12110 1019 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 PLEKHH3Q7Z736 793 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 CHST7Q9NS84 486 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 DNAJB9Q9UBS3 223 aa13.03□□□□□ -0.32
CCDC88A-204ENST00000413716 OR6C74A6NCV1 312 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 LACTBL1A8MY62 500 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 C8BP07358 591 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 HSD11B2P80365 405 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 WDR53Q7Z5U6 358 aaPredicted RBP13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 C3orf49Q96BT1 292 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 DIDO1Q9BTC0 2240 aaKnown RBP13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 PLGLB1Q02325 96 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 TSTQ16762 297 aaKnown RBP13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 CDNFQ49AH0 187 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 TLR10Q9BXR5 811 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 MRM3Q9HC36 420 aaKnown RBP13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 MAN2C1Q9NTJ4 1040 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 IGSF1Q8N6C5 1336 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 BUD23O43709 281 aaKnown RBP13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 PRMT2P55345 433 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 ZC3H12AQ5D1E8 599 aaKnown RBP13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 C3P1Q6ZMU1 363 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 SIRT2Q8IXJ6 389 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 SLCO1B3Q9NPD5 702 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 P2RX2Q9UBL9 471 aa13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 RUVBL1Q9Y265 456 aaKnown RBP13.02□□□□□ -0.32
CCDC88A-204ENST00000413716 RPP40O75818 363 aaKnown RBP13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 CDRT1O95170 752 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 STON2Q8WXE9 905 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 FDXACB1Q9BRP7 624 aaPredicted RBP13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 ATG5Q9H1Y0 275 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 RCBTB2O95199 551 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 CD44P16070 742 aaKnown RBP13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 TPT1P8Q9HAU6 139 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 KBTBD4Q9NVX7 518 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 A8MV72 311 aaPredicted RBP13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 BANF1O75531 89 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 S100A7P31151 101 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 ZNF41P51814 821 aaPredicted RBP13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 HECTD2Q5U5R9 776 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 MOB1BQ7L9L4 216 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 TTLQ8NG68 377 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 RIC1Q4ADV7 1423 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 ENTPD3O75355 529 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 FGF19O95750 216 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 PPATQ06203 517 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 PDSS1Q5T2R2 415 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 GSG1LQ6UXU4 331 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 RASGEF1CQ8N431 466 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 POTEKPQ9BYX7 375 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 DHX33Q9H6R0 707 aaKnown RBP13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 ZNF286AQ9HBT8 521 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 FRMPD4Q14CM0 1322 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 RP1P56715 2156 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 MPPED1O15442 326 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 DIRAS3O95661 229 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 OR8U9P0C7N5 309 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 CDH15P55291 814 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 SH3PXD2AQ5TCZ1 1133 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC39A4Q6P5W5 647 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC29A4Q7RTT9 530 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 AZIN2Q96A70 460 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 OSBPL7Q9BZF2 842 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 GRHPRQ9UBQ7 328 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC7A11Q9UPY5 501 aa13.02□□□□□ -0.33
CCDC88A-204ENST00000413716 ERCC1P07992 297 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 PIRTP0C851 137 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 ODF4Q2M2E3 257 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 TATDN1Q6P1N9 297 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 FAM110BQ8TC76 370 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 TMEM80Q96HE8 168 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 CORO1BQ9BR76 489 aa13.01□□□□□ -0.33
CCDC88A-204ENST00000413716 USP6P35125 1406 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms