RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 PCDHGA11Q9Y5H2 935 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 PCM1Q15154 2024 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 A0A1W2PR77 199 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 NPIPB8E9PQR5 432 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 MAP3K13O43283 966 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 SLC22A3O75751 556 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 F3P13726 295 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 CAPN3P20807 821 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 IL12AP29459 219 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 GRIK2Q13002 908 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 MAD2L1Q13257 205 aaPredicted RBP13.56□□□□□ -0.24
GPNMB-203ENST00000409458 FBXW10Q5XX13 1052 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 CYB5D1Q6P9G0 228 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 PARGQ86W56 976 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 C17orf64Q86WR6 236 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 DSELQ8IZU8 1212 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 KYQ8NBH2 561 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 FAM13CQ8NE31 585 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 HUS1BQ8NHY5 278 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 FAM174AQ8TBP5 190 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 SH3KBP1Q96B97 665 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 CMTM7Q96FZ5 175 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 HSPA12BQ96MM6 686 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 NECAB3Q96P71 396 aaPredicted RBP13.56□□□□□ -0.24
GPNMB-203ENST00000409458 IER2Q9BTL4 223 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 SPATA6Q9NWH7 488 aaPredicted RBP13.56□□□□□ -0.24
GPNMB-203ENST00000409458 CUEDC1Q9NWM3 386 aaPredicted RBP13.56□□□□□ -0.24
GPNMB-203ENST00000409458 ASIC5Q9NY37 505 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 ZIM2Q9NZV7 527 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 EIF3LQ9Y262 564 aaKnown RBP13.56□□□□□ -0.24
GPNMB-203ENST00000409458 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.56□□□□□ -0.24
GPNMB-203ENST00000409458 COLEC10Q9Y6Z7 277 aa13.56□□□□□ -0.24
GPNMB-203ENST00000409458 TRBV23OR9-2A0A075B6M9 112 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 MAGEB17A8MXT2 336 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 ANKRD28O15084 1053 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 ETHE1O95571 254 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 STX5Q13190 355 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 RCAN2Q14206 197 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 PTGR1Q14914 329 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 MMEL1Q495T6 779 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 USP39Q53GS9 565 aaKnown RBP13.55□□□□□ -0.24
GPNMB-203ENST00000409458 PAGE2BQ5JRK9 111 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 BLOC1S3Q6QNY0 202 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 FAM129CQ86XR2 697 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 LAS2Q8IYD9 372 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 ULK2Q8IYT8 1036 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 LIX1Q8N485 282 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 MFSD2AQ8NA29 543 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 ZNF740Q8NDX6 193 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 PROKR1Q8TCW9 393 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 CXorf40BQ96DE9 158 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 GSDMCQ9BYG8 508 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 PCBD2Q9H0N5 130 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 MIR1-1HGQ9H1L0 117 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 MMADHCQ9H3L0 296 aaPredicted RBP13.55□□□□□ -0.24
GPNMB-203ENST00000409458 EFCAB1Q9HAE3 211 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 PELI2Q9HAT8 420 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 SLC52A3Q9NQ40 469 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 TAAR2Q9P1P5 351 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 DLGAP4Q9Y2H0 992 aa13.55□□□□□ -0.24
GPNMB-203ENST00000409458 A0A088AWK7 358 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 NRP2O60462 931 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 HSD3B1P14060 373 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 AMD1P17707 334 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 HSD3B2P26439 372 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 NDUFS1P28331 727 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 CD38P28907 300 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 PEBP1P30086 187 aaKnown RBP13.54□□□□□ -0.24
GPNMB-203ENST00000409458 SLC19A1P41440 591 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 RPS13P62277 151 aaKnown RBP13.54□□□□□ -0.24
GPNMB-203ENST00000409458 TBL3Q12788 808 aaKnown RBP13.54□□□□□ -0.24
GPNMB-203ENST00000409458 LAPTM5Q13571 262 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 VPS26BQ4G0F5 336 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 TSSK4Q6SA08 328 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 C16orf89Q6UX73 402 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 SLC36A4Q6YBV0 504 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 LPCAT2Q7L5N7 544 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 RETREG3Q86VR2 466 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 TMEFF1Q8IYR6 380 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 ARHGAP24Q8N264 748 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 PATE1Q8WXA2 126 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 REPS1Q96D71 796 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 MRPL1Q9BYD6 325 aaKnown RBP13.54□□□□□ -0.24
GPNMB-203ENST00000409458 BRF2Q9HAW0 419 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 TM9SF3Q9HD45 589 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 APOBEC3BQ9UH17 382 aaKnown RBP13.54□□□□□ -0.24
GPNMB-203ENST00000409458 PRDM4Q9UKN5 801 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 VCANP13611 3396 aa13.54□□□□□ -0.24
GPNMB-203ENST00000409458 FAM234BA2RU67 622 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 ASPDHA6ND91 283 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 BBIP1A8MTZ0 92 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 MRASO14807 208 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 SH3BGRLO75368 114 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 BCKDHAP12694 445 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 JAK1P23458 1154 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 DPP6P42658 865 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 RAP1GDS1P52306 607 aa13.53□□□□□ -0.24
GPNMB-203ENST00000409458 POLR2JP52435 117 aaKnown RBP13.53□□□□□ -0.24
GPNMB-203ENST00000409458 KCNK10P57789 538 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms