RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 MLYCDO95822 493 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 MTHFD1P11586 935 aaKnown RBP12.99□□□□□ -0.33
LIMS1-204ENST00000409441 MYF5P13349 255 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 EEF1DP29692 281 aaKnown RBP12.99□□□□□ -0.33
LIMS1-204ENST00000409441 GRK6P43250 576 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 STX1BP61266 288 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 SH3BP2P78314 561 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 FASTKQ14296 549 aaKnown RBP12.99□□□□□ -0.33
LIMS1-204ENST00000409441 KRT33BQ14525 404 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 PIGGQ5H8A4 983 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 STPG1Q5TH74 334 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 CLEC6AQ6EIG7 209 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 C17orf82Q86X59 251 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-204ENST00000409441 HPS6Q86YV9 775 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 ARL10Q8N8L6 244 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 RHBDD1Q8TEB9 315 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 SLC37A2Q8TED4 501 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 ZNF483Q8TF39 744 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-204ENST00000409441 CXorf40BQ96DE9 158 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 WDR41Q9HAD4 459 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 PFDN4Q9NQP4 134 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 NUDT4Q9NZJ9 180 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 HEBP2Q9Y5Z4 205 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 COLEC10Q9Y6Z7 277 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 RIF1Q5UIP0 2472 aaKnown RBP12.99□□□□□ -0.33
LIMS1-204ENST00000409441 TP53BP1Q12888 1972 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-204ENST00000409441 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-204ENST00000409441 NPEPPSL1A6NEC2 478 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 GFYI3L273 518 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 CDC7O00311 574 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 FLRT2O43155 660 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 SIX3O95343 332 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-204ENST00000409441 VIPP01282 170 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 CDH13P55290 713 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 MAZP56270 477 aaKnown RBP12.99□□□□□ -0.33
LIMS1-204ENST00000409441 INAVAQ3KP66 663 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 C14orf28Q4W4Y0 310 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 DUS1LQ6P1R4 473 aaKnown RBP12.99□□□□□ -0.33
LIMS1-204ENST00000409441 UNC5DQ6UXZ4 953 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 HACD2Q6Y1H2 254 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 SLC9B2Q86UD5 537 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 GPSM1Q86YR5 675 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 TRIM48Q8IWZ4 208 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 SLC35F3Q8IY50 421 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 FAM181AQ8N9Y4 354 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 TWIST2Q8WVJ9 160 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 APOLD1Q96LR9 279 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 SLC25A23Q9BV35 468 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 VCX3BQ9H321 246 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 TRIT1Q9H3H1 467 aaKnown RBP12.99□□□□□ -0.33
LIMS1-204ENST00000409441 MVB12BQ9H7P6 319 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 ADAMTS6Q9UKP5 1117 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 IKZF3Q9UKT9 509 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 DNAJC15Q9Y5T4 150 aa12.99□□□□□ -0.33
LIMS1-204ENST00000409441 BBIP1A8MTZ0 92 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 SH3BP5O60239 455 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 PSIP1O75475 530 aaKnown RBP12.98□□□□□ -0.33
LIMS1-204ENST00000409441 C1orf105O95561 183 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 C8GP07360 202 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 SNRPB2P08579 225 aaKnown RBP12.98□□□□□ -0.33
LIMS1-204ENST00000409441 TSPAN8P19075 237 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 ME2P23368 584 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 MAPK9P45984 424 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 RPIAP49247 311 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 MRPL19P49406 292 aaKnown RBP12.98□□□□□ -0.33
LIMS1-204ENST00000409441 UBE2IP63279 158 aaKnown RBP12.98□□□□□ -0.33
LIMS1-204ENST00000409441 PRKG2Q13237 762 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 BIRC2Q13490 618 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 AGKQ53H12 422 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 TCHHL1Q5QJ38 904 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-204ENST00000409441 GK5Q6ZS86 529 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 UBE2R2Q712K3 238 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-204ENST00000409441 DHDDSQ86SQ9 333 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 ADAMTSL2Q86TH1 951 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 KIAA2013Q8IYS2 634 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 TBC1D21Q8IYX1 336 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 CHCHD4Q8N4Q1 142 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 OR5AR1Q8NGP9 310 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 OR5K2Q8NHB8 316 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 SLC26A7Q8TE54 656 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 TRPC4APQ8TEL6 797 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 DLG3Q92796 817 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 N4BP2L2Q92802 583 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-204ENST00000409441 CCDC124Q96CT7 223 aaKnown RBP12.98□□□□□ -0.33
LIMS1-204ENST00000409441 CDRT15Q96T59 188 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 CCT7Q99832 543 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 SLC12A9Q9BXP2 914 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 PCTPQ9UKL6 214 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 PADI4Q9UM07 663 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 LRCH1Q9Y2L9 728 aa12.98□□□□□ -0.33
LIMS1-204ENST00000409441 LRRC14BA6NHZ5 514 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 PPM1DO15297 605 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 SLC16A5O15375 505 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 CRCPO75575 148 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 CATP04040 527 aaKnown RBP12.97□□□□□ -0.33
LIMS1-204ENST00000409441 RPN2P04844 631 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 UROSP10746 265 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 CD1EP15812 388 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 LBPP18428 481 aa12.97□□□□□ -0.33
LIMS1-204ENST00000409441 MAP4P27816 1152 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms