RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ZNF607Q96SK3 696 aa8.82□□□□□ -1
LIG4-202ENST00000405925 C17orf62Q9BQA9 187 aa8.82□□□□□ -1
LIG4-202ENST00000405925 TMEM79Q9BSE2 394 aa8.82□□□□□ -1
LIG4-202ENST00000405925 SLC12A9Q9BXP2 914 aa8.82□□□□□ -1
LIG4-202ENST00000405925 ROGDIQ9GZN7 287 aa8.82□□□□□ -1
LIG4-202ENST00000405925 RIBC2Q9H4K1 309 aa8.82□□□□□ -1
LIG4-202ENST00000405925 KRCC1Q9NPI7 259 aaPredicted RBP8.82□□□□□ -1
LIG4-202ENST00000405925 SLC9A8Q9Y2E8 581 aa8.82□□□□□ -1
LIG4-202ENST00000405925 KLHL33A6NCF5 533 aa8.81□□□□□ -1
LIG4-202ENST00000405925 PRAMEF26H0Y7S4 382 aa8.81□□□□□ -1
LIG4-202ENST00000405925 EIF3FO00303 357 aaPredicted RBP8.81□□□□□ -1
LIG4-202ENST00000405925 CLOCKO15516 846 aa8.81□□□□□ -1
LIG4-202ENST00000405925 NDUFB5O43674 189 aa8.81□□□□□ -1
LIG4-202ENST00000405925 PRLP01236 227 aa8.81□□□□□ -1
LIG4-202ENST00000405925 MYCLP1P12525 358 aaPredicted RBP8.81□□□□□ -1
LIG4-202ENST00000405925 RAB28P51157 221 aa8.81□□□□□ -1
LIG4-202ENST00000405925 TAS2R50P59544 299 aa8.81□□□□□ -1
LIG4-202ENST00000405925 SMAD4Q13485 552 aaKnown RBP8.81□□□□□ -1
LIG4-202ENST00000405925 PTGR1Q14914 329 aa8.81□□□□□ -1
LIG4-202ENST00000405925 SUZ12Q15022 739 aaKnown RBP8.81□□□□□ -1
LIG4-202ENST00000405925 RFTN2Q52LD8 501 aaPredicted RBP8.81□□□□□ -1
LIG4-202ENST00000405925 TOR1AIP1Q5JTV8 583 aa8.81□□□□□ -1
LIG4-202ENST00000405925 COL13A1Q5TAT6 717 aaPredicted RBP8.81□□□□□ -1
LIG4-202ENST00000405925 TNFAIP8L2Q6P589 184 aaPredicted RBP8.81□□□□□ -1
LIG4-202ENST00000405925 AMIGO1Q86WK6 493 aa8.81□□□□□ -1
LIG4-202ENST00000405925 RASGEF1AQ8N9B8 481 aa8.81□□□□□ -1
LIG4-202ENST00000405925 TRIB3Q96RU7 358 aa8.81□□□□□ -1
LIG4-202ENST00000405925 KRT84Q9NSB2 600 aa8.81□□□□□ -1
LIG4-202ENST00000405925 MARK1Q9P0L2 795 aa8.81□□□□□ -1
LIG4-202ENST00000405925 SEC14L3Q9UDX4 400 aa8.81□□□□□ -1
LIG4-202ENST00000405925 U3KQV3 271 aa8.81□□□□□ -1
LIG4-202ENST00000405925 ZNF860A6NHJ4 632 aa8.81□□□□□ -1
LIG4-202ENST00000405925 GFRA2O00451 464 aa8.81□□□□□ -1
LIG4-202ENST00000405925 PDE9AO76083 593 aa8.81□□□□□ -1
LIG4-202ENST00000405925 UMPSP11172 480 aa8.81□□□□□ -1
LIG4-202ENST00000405925 PCSK2P16519 638 aa8.81□□□□□ -1
LIG4-202ENST00000405925 RPS7P62081 194 aaKnown RBP8.81□□□□□ -1
LIG4-202ENST00000405925 ZNF155Q12901 538 aaPredicted RBP8.81□□□□□ -1
LIG4-202ENST00000405925 AFMIDQ63HM1 303 aa8.81□□□□□ -1
LIG4-202ENST00000405925 TMEM154Q6P9G4 183 aa8.81□□□□□ -1
LIG4-202ENST00000405925 USP53Q70EK8 1073 aa8.81□□□□□ -1
LIG4-202ENST00000405925 KCT2Q8NC54 265 aa8.81□□□□□ -1
LIG4-202ENST00000405925 FBXO15Q8NCQ5 510 aaPredicted RBP8.81□□□□□ -1
LIG4-202ENST00000405925 WDR83Q9BRX9 315 aaKnown RBP8.81□□□□□ -1
LIG4-202ENST00000405925 RPP25Q9BUL9 199 aaKnown RBP8.81□□□□□ -1
LIG4-202ENST00000405925 REXO4Q9GZR2 422 aaKnown RBP8.81□□□□□ -1
LIG4-202ENST00000405925 PREBQ9HCU5 417 aa8.81□□□□□ -1
LIG4-202ENST00000405925 PRDM8Q9NQV8 689 aa8.81□□□□□ -1
LIG4-202ENST00000405925 DLGAP2Q9P1A6 1054 aa8.81□□□□□ -1
LIG4-202ENST00000405925 GPR34Q9UPC5 381 aa8.81□□□□□ -1
LIG4-202ENST00000405925 SAMHD1Q9Y3Z3 626 aaKnown RBP8.81□□□□□ -1
LIG4-202ENST00000405925 FADS3Q9Y5Q0 445 aa8.81□□□□□ -1
LIG4-202ENST00000405925 TRPM7Q96QT4 1865 aa8.81□□□□□ -1
LIG4-202ENST00000405925 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.81□□□□□ -1
LIG4-202ENST00000405925 TIPRLO75663 272 aa8.81□□□□□ -1
LIG4-202ENST00000405925 OLFM2O95897 454 aa8.81□□□□□ -1
LIG4-202ENST00000405925 CST1P01037 141 aa8.81□□□□□ -1
LIG4-202ENST00000405925 PDHA2P29803 388 aa8.81□□□□□ -1
LIG4-202ENST00000405925 HTR6P50406 440 aa8.81□□□□□ -1
LIG4-202ENST00000405925 SH3BP2P78314 561 aa8.81□□□□□ -1
LIG4-202ENST00000405925 PRR5P85299 388 aa8.81□□□□□ -1
LIG4-202ENST00000405925 GSTM4Q03013 218 aa8.81□□□□□ -1
LIG4-202ENST00000405925 GCNT6Q5T4J0 391 aa8.81□□□□□ -1
LIG4-202ENST00000405925 ISLR2Q6UXK2 745 aa8.81□□□□□ -1
LIG4-202ENST00000405925 TICAM1Q8IUC6 712 aa8.81□□□□□ -1
LIG4-202ENST00000405925 TMEFF1Q8IYR6 380 aa8.81□□□□□ -1
LIG4-202ENST00000405925 PHF10Q8WUB8 498 aaKnown RBP8.81□□□□□ -1
LIG4-202ENST00000405925 ROPN1LQ96C74 230 aa8.81□□□□□ -1
LIG4-202ENST00000405925 DENND2DQ9H6A0 471 aaPredicted RBP8.81□□□□□ -1
LIG4-202ENST00000405925 ZIM2Q9NZV7 527 aa8.81□□□□□ -1
LIG4-202ENST00000405925 STOX2Q9P2F5 926 aaPredicted RBP8.81□□□□□ -1
LIG4-202ENST00000405925 ATP6V1HQ9UI12 483 aa8.81□□□□□ -1
LIG4-202ENST00000405925 PCTPQ9UKL6 214 aa8.81□□□□□ -1
LIG4-202ENST00000405925 SUFUQ9UMX1 484 aa8.81□□□□□ -1
LIG4-202ENST00000405925 DLGAP4Q9Y2H0 992 aa8.81□□□□□ -1
LIG4-202ENST00000405925 ARHGEF33A8MVX0 844 aa8.8□□□□□ -1
LIG4-202ENST00000405925 PGRP06401 933 aa8.8□□□□□ -1
LIG4-202ENST00000405925 NCK1P16333 377 aa8.8□□□□□ -1
LIG4-202ENST00000405925 NOS3P29474 1203 aa8.8□□□□□ -1
LIG4-202ENST00000405925 AVPR1BP47901 424 aa8.8□□□□□ -1
LIG4-202ENST00000405925 PGDP52209 483 aa8.8□□□□□ -1
LIG4-202ENST00000405925 EMX2Q04743 252 aa8.8□□□□□ -1
LIG4-202ENST00000405925 GRB7Q14451 532 aa8.8□□□□□ -1
LIG4-202ENST00000405925 WSCD2Q2TBF2 565 aa8.8□□□□□ -1
LIG4-202ENST00000405925 INAVAQ3KP66 663 aa8.8□□□□□ -1
LIG4-202ENST00000405925 LIPJQ5W064 366 aa8.8□□□□□ -1
LIG4-202ENST00000405925 DEF8Q6ZN54 512 aa8.8□□□□□ -1
LIG4-202ENST00000405925 DHRSXQ8N5I4 330 aa8.8□□□□□ -1
LIG4-202ENST00000405925 ADAMTS19Q8TE59 1207 aa8.8□□□□□ -1
LIG4-202ENST00000405925 DACH2Q96NX9 599 aa8.8□□□□□ -1
LIG4-202ENST00000405925 GAL3ST4Q96RP7 486 aa8.8□□□□□ -1
LIG4-202ENST00000405925 PKP4Q99569 1192 aa8.8□□□□□ -1
LIG4-202ENST00000405925 RMI1Q9H9A7 625 aa8.8□□□□□ -1
LIG4-202ENST00000405925 TRPS1Q9UHF7 1281 aa8.8□□□□□ -1
LIG4-202ENST00000405925 DNAJC15Q9Y5T4 150 aa8.8□□□□□ -1
LIG4-202ENST00000405925 C2orf74A8MZ97 194 aa8.8□□□□□ -1
LIG4-202ENST00000405925 TMEM150CB9EJG8 249 aa8.8□□□□□ -1
LIG4-202ENST00000405925 AP3D1O14617 1153 aa8.8□□□□□ -1
LIG4-202ENST00000405925 ANPEPP15144 967 aa8.8□□□□□ -1
LIG4-202ENST00000405925 CSNK2A2P19784 350 aaPredicted RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms