RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SLC26A7Q8TE54 656 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 ZNF483Q8TF39 744 aaPredicted RBP9.89□□□□□ -0.83
VPS53-202ENST00000389040 TMEM159Q96B96 161 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 C3orf30Q96M34 536 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 CDRT15Q96T59 188 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 NPAS2Q99743 824 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 MRPL1Q9BYD6 325 aaKnown RBP9.89□□□□□ -0.83
VPS53-202ENST00000389040 EPB41L1Q9H4G0 881 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 AKTIPQ9H8T0 292 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 WDR41Q9HAD4 459 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 SEMA4BQ9NPR2 832 aaPredicted RBP9.89□□□□□ -0.83
VPS53-202ENST00000389040 POT1Q9NUX5 634 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 UTP6Q9NYH9 597 aaKnown RBP9.89□□□□□ -0.83
VPS53-202ENST00000389040 GULP1Q9UBP9 304 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 TBC1D29Q9UFV1 150 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 PADI4Q9UM07 663 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 PRKAB1Q9Y478 270 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 ST14Q9Y5Y6 855 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 COLEC10Q9Y6Z7 277 aa9.89□□□□□ -0.83
VPS53-202ENST00000389040 PTPRZ1P23471 2315 aaPredicted RBP9.89□□□□□ -0.83
VPS53-202ENST00000389040 ATP6AP2A0A1C7CYW4 349 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 IFRD1O00458 451 aaPredicted RBP9.88□□□□□ -0.83
VPS53-202ENST00000389040 PIP5K1BO14986 540 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 MAP3K7O43318 606 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 KDM1AO60341 852 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 NOBOXO60393 691 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 CRCPO75575 148 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 ATP6AP2O75787 350 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 TRIM16O95361 564 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 BAG2O95816 211 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 CBSLP0DN79 551 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 ACADSP16219 412 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 ATP6V1C1P21283 382 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 CBSP35520 551 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 STX1BP61266 288 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 STX5Q13190 355 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 AGKQ53H12 422 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 FBXO48Q5FWF7 155 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 PIGGQ5H8A4 983 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 CAPRIN2Q6IMN6 1127 aaKnown RBP9.88□□□□□ -0.83
VPS53-202ENST00000389040 NEK10Q6ZWH5 1172 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 ZNF438Q7Z4V0 828 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 DDIASQ8IXT1 998 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 NAGSQ8N159 534 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 CACTIN-AS1Q8N1I8 211 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 PYDC1Q8WXC3 89 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 PDLIM5Q96HC4 596 aaKnown RBP9.88□□□□□ -0.83
VPS53-202ENST00000389040 KCNA7Q96RP8 456 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 OSGEPL1Q9H4B0 414 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 NUDT4Q9NZJ9 180 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 PCTPQ9UKL6 214 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 KCNK6Q9Y257 313 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 DHRS7Q9Y394 339 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 PCYT1BQ9Y5K3 369 aaPredicted RBP9.88□□□□□ -0.83
VPS53-202ENST00000389040 A0A1B0GTL3 188 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 SLC5A10A0PJK1 596 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 PDZK1P1A8MUH7 402 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 CFLARO15519 480 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 DKK1O94907 266 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 MLYCDO95822 493 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 RPN2P04844 631 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 CELA2BP08218 269 aaPredicted RBP9.88□□□□□ -0.83
VPS53-202ENST00000389040 SLC35G4P0C7Q5 338 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 ACADVLP49748 655 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 AGTR2P50052 363 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 DAB2P98082 770 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 SQSTM1Q13501 440 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 NFE2L1Q14494 772 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 SYTL3Q4VX76 610 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 ADAMTSL2Q86TH1 951 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 SLC35F3Q8IY50 421 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 ARL14Q8N4G2 192 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 HIPK4Q8NE63 616 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 ELMO1Q92556 727 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 N4BP2L2Q92802 583 aaPredicted RBP9.88□□□□□ -0.83
VPS53-202ENST00000389040 CCDC97Q96F63 343 aaPredicted RBP9.88□□□□□ -0.83
VPS53-202ENST00000389040 DPYSL5Q9BPU6 564 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 TUBB1Q9H4B7 451 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 MVB12BQ9H7P6 319 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 PRDM8Q9NQV8 689 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 CD274Q9NZQ7 290 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 CCDC167Q9P0B6 97 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 PACSIN3Q9UKS6 424 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 BTBD3Q9Y2F9 522 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 PTGDR2Q9Y5Y4 395 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 PRSS21Q9Y6M0 314 aa9.88□□□□□ -0.83
VPS53-202ENST00000389040 DOCK9Q9BZ29 2069 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 COL5A1P20908 1838 aaPredicted RBP9.87□□□□□ -0.83
VPS53-202ENST00000389040 VPS4BO75351 444 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 ESRRBO95718 433 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 SNRPB2P08579 225 aaKnown RBP9.87□□□□□ -0.83
VPS53-202ENST00000389040 ALDOCP09972 364 aaKnown RBP9.87□□□□□ -0.83
VPS53-202ENST00000389040 CCR7P32248 378 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 EPHA4P54764 986 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 PKNOX1P55347 436 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 GPLD1P80108 840 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 CDC16Q13042 620 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 BIRC2Q13490 618 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 CEACAM7Q14002 265 aa9.87□□□□□ -0.83
VPS53-202ENST00000389040 GBX1Q14549 363 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms