RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 OR1A2Q9Y585 309 aa13.87□□□□□ -0.19
HMGA1-203ENST00000374116 PTGDR2Q9Y5Y4 395 aa13.87□□□□□ -0.19
HMGA1-203ENST00000374116 GPC6Q9Y625 555 aaPredicted RBP13.87□□□□□ -0.19
HMGA1-203ENST00000374116 NR5A2O00482 541 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 PRR35P0CG20 571 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 GSTT2P0CG29 244 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 GSTT2BP0CG30 244 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 ZNF26P17031 533 aaPredicted RBP13.86□□□□□ -0.19
HMGA1-203ENST00000374116 HNRNPA2B1P22626 353 aaKnown RBP13.86□□□□□ -0.19
HMGA1-203ENST00000374116 NFKBIAP25963 317 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 CD27P26842 260 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 TTKP33981 857 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 NBL1P41271 181 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 SPINT3P49223 89 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 AGTR2P50052 363 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 RHDQ02161 417 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 INPP5AQ14642 412 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 WDR45BQ5MNZ6 344 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 PRAMEF14Q5SWL7 426 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 FAM219BQ5XKK7 198 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 GPRIN3Q6ZVF9 776 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 C11orf74Q86VG3 221 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 LILRA2Q8N149 483 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 FAM156AQ8NDB6 213 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 C1orf216Q8TAB5 229 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 DNASE2BQ8WZ79 361 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 EFHD2Q96C19 240 aaPredicted RBP13.86□□□□□ -0.19
HMGA1-203ENST00000374116 ISOC1Q96CN7 298 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 DUS3LQ96G46 650 aaKnown RBP13.86□□□□□ -0.19
HMGA1-203ENST00000374116 PLEKHA8Q96JA3 519 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 BMFQ96LC9 184 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 ZNF382Q96SR6 550 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 GPATCH1Q9BRR8 931 aaKnown RBP13.86□□□□□ -0.19
HMGA1-203ENST00000374116 RIOK2Q9BVS4 552 aaKnown RBP13.86□□□□□ -0.19
HMGA1-203ENST00000374116 CLPBQ9H078 707 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 COPS7BQ9H9Q2 264 aaPredicted RBP13.86□□□□□ -0.19
HMGA1-203ENST00000374116 SARS2Q9NP81 518 aaKnown RBP13.86□□□□□ -0.19
HMGA1-203ENST00000374116 GIN1Q9NXP7 522 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 BTRCQ9Y297 605 aa13.86□□□□□ -0.19
HMGA1-203ENST00000374116 TNPO3Q9Y5L0 923 aaKnown RBP13.86□□□□□ -0.19
HMGA1-203ENST00000374116 ZFHX2Q9C0A1 2572 aaPredicted RBP13.86□□□□□ -0.19
HMGA1-203ENST00000374116 A0A1B0GTL3 188 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 PRORSD1PA6NEY8 169 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 IQCF5A8MTL0 148 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 E2F3O00716 465 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 ANGPT2O15123 496 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 BCAT2O15382 392 aaPredicted RBP13.85□□□□□ -0.19
HMGA1-203ENST00000374116 STAMBPO95630 424 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 FUCA1P04066 466 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 CFIP05156 583 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 ZNF30P17039 623 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 ITGALP20701 1170 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 CDH3P22223 829 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 TMED10P49755 219 aaKnown RBP13.85□□□□□ -0.19
HMGA1-203ENST00000374116 GPR33Q49SQ1 333 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 XKR7Q5GH72 579 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 ZNF362Q5T0B9 420 aaPredicted RBP13.85□□□□□ -0.19
HMGA1-203ENST00000374116 TPRG1LQ5T0D9 272 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 IRAK1BP1Q5VVH5 260 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 PTRHD1Q6GMV3 140 aaKnown RBP13.85□□□□□ -0.19
HMGA1-203ENST00000374116 THOC7Q6I9Y2 204 aaKnown RBP13.85□□□□□ -0.19
HMGA1-203ENST00000374116 GCNT7Q6ZNI0 430 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 ADAMTSL2Q86TH1 951 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 RBFAQ8N0V3 343 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 CENPSQ8N2Z9 138 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 MINDY1Q8N5J2 469 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 SNX31Q8N9S9 440 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 TMEM145Q8NBT3 493 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 DTD2Q96FN9 168 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 ASB8Q9H765 288 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 GID8Q9NWU2 228 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 GPR45Q9Y5Y3 372 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 GLYATL1P3A0A0U1RQE8 302 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 MYOCOSA0A1B0GUC4 107 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 PRAMEF26H0Y7S4 382 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 SCAMP1O15126 338 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 INPP4BO15327 924 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 SULT1C4O75897 302 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 S100BP04271 92 aaPredicted RBP13.85□□□□□ -0.19
HMGA1-203ENST00000374116 ACRV1P26436 265 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 MPLP40238 635 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 FOXM1Q08050 763 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 PCBP2Q15366 365 aaKnown RBP eCLIP13.85□□□□□ -0.191e-16■■■□□ 16.2
HMGA1-203ENST00000374116 CHRNA6Q15825 494 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 SPATS1Q496A3 300 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 FBXO48Q5FWF7 155 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 RAET1GQ6H3X3 334 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 BLOC1S3Q6QNY0 202 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 FRA10AC1Q70Z53 315 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 GPR141Q7Z602 305 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 RETREG3Q86VR2 466 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 SYT12Q8IV01 421 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 CHCHD4Q8N4Q1 142 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 OR13H1Q8NG92 308 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 TBC1D15Q8TC07 691 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 TMIGD2Q96BF3 282 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 AP2M1Q96CW1 435 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 RMND5BQ96G75 393 aaPredicted RBP13.85□□□□□ -0.19
HMGA1-203ENST00000374116 PKP2Q99959 881 aa13.85□□□□□ -0.19
HMGA1-203ENST00000374116 BOCQ9BWV1 1114 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms