RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 RPS19P39019 145 aaKnown RBP6.6□□□□□ -1.35
VPS39-202ENST00000348544 MLLT3P42568 568 aaPredicted RBP6.6□□□□□ -1.35
VPS39-202ENST00000348544 ARPP19P56211 112 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 SNRPD2P62316 118 aaKnown RBP6.6□□□□□ -1.35
VPS39-202ENST00000348544 CSNK2BP67870 215 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 ST3GAL4Q11206 333 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 GTF2H2Q13888 395 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 TTLL4Q14679 1199 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 TSTQ16762 297 aaKnown RBP6.6□□□□□ -1.35
VPS39-202ENST00000348544 SLC39A12Q504Y0 691 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 CTSL3PQ5NE16 218 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 C10orf62Q5T681 223 aaPredicted RBP6.6□□□□□ -1.35
VPS39-202ENST00000348544 PIK3R6Q5UE93 754 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 FAAH2Q6GMR7 532 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 LAMTOR1Q6IAA8 161 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 GTF2H2CQ6P1K8 395 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 PAMR1Q6UXH9 720 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 FAM124AQ86V42 546 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 ZSWIM9Q86XI8 627 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 LIX1LQ8IVB5 337 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 PIANPQ8IYJ0 282 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 RDH10Q8IZV5 341 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 NKAPQ8N5F7 415 aaKnown RBP6.6□□□□□ -1.35
VPS39-202ENST00000348544 TEX26Q8N6G2 289 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 YIPF7Q8N8F6 280 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 TMEM40Q8WWA1 233 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 HSH2DQ96JZ2 352 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 SENP8Q96LD8 212 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 PPP3R2Q96LZ3 170 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 ZFP42Q96MM3 310 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 COL21A1Q96P44 957 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 SEMA3CQ99985 751 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 B3GNT4Q9C0J1 378 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 C11orf54Q9H0W9 315 aaPredicted RBP6.6□□□□□ -1.35
VPS39-202ENST00000348544 CSNK1G1Q9HCP0 422 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 TXNRD2Q9NNW7 524 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 ABCB8Q9NUT2 735 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 ZNF226Q9NYT6 803 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 ITM2BQ9Y287 266 aa6.6□□□□□ -1.35
VPS39-202ENST00000348544 LEUTXA8MZ59 168 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 H3BM21 787 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 H3BRB1 525 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 HAS3O00219 553 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 RGS5O15539 181 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 CA12O43570 354 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 ERN1O75460 977 aaKnown RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 SCO1O75880 301 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 CSF2P04141 144 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 ALPPP05187 535 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 FHP07954 510 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 CYP2A6P11509 494 aaPredicted RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 HOXB6P17509 224 aaKnown RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 MYL9P24844 172 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 ZNF140P52738 457 aaPredicted RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 ITGA1P56199 1179 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 ABHD18Q0P651 414 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 ALFQ53S48 1182 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 ZNF648Q5T619 568 aaPredicted RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 OR4F3Q6IEY1 312 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 MSANTD2Q6P1R3 559 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 DOK6Q6PKX4 331 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 DPY19L3Q6ZPD9 716 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 IDO2Q6ZQW0 420 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 CCDC149Q6ZUS6 474 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 UMODL1-AS1Q8N2C9 162 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 TTC16Q8NEE8 873 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 OR4M2Q8NGB6 313 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 VANGL1Q8TAA9 524 aaPredicted RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 BRSK1Q8TDC3 778 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 UBASH3BQ8TF42 649 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 DEDD2Q8WXF8 326 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 PEX13Q92968 403 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 MYLPFQ96A32 169 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 SMARCD1Q96GM5 515 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 TSEN34Q9BSV6 310 aaKnown RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 BBS2Q9BXC9 721 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 UCK2Q9BZX2 261 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 KCNH6Q9H252 994 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 IPPKQ9H8X2 491 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 C3orf14Q9HBI5 128 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 GPRC5BQ9NZH0 403 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 TMPRSS11EQ9UL52 423 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 PIN4Q9Y237 131 aaKnown RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 MAN2B2Q9Y2E5 1009 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 DLGAP4Q9Y2H0 992 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 CFAP20Q9Y6A4 193 aaKnown RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 PTCH2Q9Y6C5 1203 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 MEIS3P2A8K0S8 358 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 WASH4PA8MWX3 477 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 TLR5O60602 858 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 TMCC2O75069 709 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 NDUFS3O75489 264 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 C9P02748 559 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 CCNYL3P0C7X3 344 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 BCKDHAP12694 445 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 POU3F3P20264 500 aaPredicted RBP6.59□□□□□ -1.35
VPS39-202ENST00000348544 CD72P21854 359 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 HTR7P34969 479 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 KIR2DL3P43628 341 aa6.59□□□□□ -1.35
VPS39-202ENST00000348544 GZMKP49863 264 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms