RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 C17orf64Q86WR6 236 aa18.3■□□□□ 0.52
CHMP4A-201ENST00000347519 NAXDQ8IW45 347 aa18.3■□□□□ 0.52
CHMP4A-201ENST00000347519 IFI44Q8TCB0 444 aa18.3■□□□□ 0.52
CHMP4A-201ENST00000347519 C7orf26Q96N11 449 aa18.3■□□□□ 0.52
CHMP4A-201ENST00000347519 CCDC3Q9BQI4 270 aa18.3■□□□□ 0.52
CHMP4A-201ENST00000347519 PCBD2Q9H0N5 130 aa18.3■□□□□ 0.52
CHMP4A-201ENST00000347519 MARCOQ9UEW3 520 aaPredicted RBP18.3■□□□□ 0.52
CHMP4A-201ENST00000347519 TIMM22Q9Y584 194 aa18.3■□□□□ 0.52
CHMP4A-201ENST00000347519 C2orf74A8MZ97 194 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 H7BY64 318 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 CLGNO14967 610 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 CBFA2T3O75081 653 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 ESRRBO95718 433 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 OTCP00480 354 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 C1GALT1C1LP0DN25 315 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 PVRP15151 417 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 PNLIPP16233 465 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 GNAZP19086 355 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 PKNOX1P55347 436 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 CCL7P80098 99 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 IRF8Q02556 426 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 PRKAA1Q13131 559 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 E2F2Q14209 437 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 INAVAQ3KP66 663 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 XKR6Q5GH73 641 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 SH2D4BQ5SQS7 431 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 STPG1Q5TH74 334 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 SPESP1Q6UW49 350 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 USP53Q70EK8 1073 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 CDYL2Q8N8U2 506 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 L3MBTL4Q8NA19 623 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 OR6C4Q8NGE1 309 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 BAHD1Q8TBE0 780 aaPredicted RBP18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 NCSTNQ92542 709 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 PRAP1Q96NZ9 151 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 ILKAPQ9H0C8 392 aaPredicted RBP18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 KLHL25Q9H0H3 589 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 RABEP2Q9H5N1 569 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 ACTR8Q9H981 624 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 EML4Q9HC35 981 aaKnown RBP18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 MRPS30Q9NP92 439 aaKnown RBP18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 TMEM9Q9P0T7 183 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 POMT2Q9UKY4 750 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 FIS1Q9Y3D6 152 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 ENTPD2Q9Y5L3 495 aa18.29■□□□□ 0.52
CHMP4A-201ENST00000347519 UNC13CQ8NB66 2214 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 A0A1W2PQM1 296 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 CAPN5O15484 640 aaPredicted RBP18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 KIF1CO43896 1103 aaKnown RBP18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 PRAMEF10O60809 474 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 CLDN9O95484 217 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 EBLN1P0CF75 366 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 KITP10721 976 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 DRD4P21917 467 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 ARL1P40616 181 aaPredicted RBP18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 CASP2P42575 452 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 CSNK1G2P78368 415 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 SF3A3Q12874 501 aaKnown RBP eCLIP18.28■□□□□ 0.529e-7■■■■□ 24.7
CHMP4A-201ENST00000347519 ATG9BQ674R7 924 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 IRGCQ6NXR0 463 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 TMPRSS9Q7Z410 1059 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 FAM129CQ86XR2 697 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 ZNF740Q8NDX6 193 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 ABHD11Q8NFV4 315 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 GRAMD1AQ96CP6 724 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 WDR34Q96EX3 536 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 THOC1Q96FV9 657 aaKnown RBP18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 CHMP6Q96FZ7 201 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 DPH7Q9BTV6 452 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 SYNPO2LQ9H987 977 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 GEMIN8Q9NWZ8 242 aaKnown RBP18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 ATXN7L1Q9ULK2 861 aaPredicted RBP18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 TRAF6Q9Y4K3 522 aa18.28■□□□□ 0.52
CHMP4A-201ENST00000347519 FAM186AA6NE01 2351 aa18.27■□□□□ 0.52
CHMP4A-201ENST00000347519 EP300Q09472 2414 aaPredicted RBP18.27■□□□□ 0.52
CHMP4A-201ENST00000347519 RIF1Q5UIP0 2472 aaKnown RBP18.27■□□□□ 0.52
CHMP4A-201ENST00000347519 PTPRZ1P23471 2315 aaPredicted RBP18.27■□□□□ 0.52
CHMP4A-201ENST00000347519 GMNCA6NCL1 334 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 FFAR3O14843 346 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 AZIN1O14977 448 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 GPR42O15529 346 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 CAPN1P07384 714 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 FGF4P08620 206 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 HOXB3P14651 431 aaPredicted RBP18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 CKMT2P17540 419 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 CMPK1P30085 196 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 GRIA3P42263 894 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 PPM1FP49593 454 aaPredicted RBP18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 HTR6P50406 440 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 ABATP80404 500 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 SLBPQ14493 270 aaKnown RBP eCLIP18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 TBCCQ15814 346 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 SLC5A12Q1EHB4 618 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 UGT3A2Q3SY77 523 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 FCRL6Q6DN72 434 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 ADNP2Q6IQ32 1131 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 ZNF425Q6IV72 752 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 ARMC6Q6NXE6 501 aa18.27■□□□□ 0.51
CHMP4A-201ENST00000347519 FAM92BQ6ZTR7 304 aa18.27■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms