RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 SOCS6O14544 535 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 KLHL41O60662 606 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 BANF1O75531 89 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 IPO13O94829 963 aaKnown RBP18.63■□□□□ 0.57
LIME1-201ENST00000309546 ENO3P13929 434 aaPredicted RBP18.63■□□□□ 0.57
LIME1-201ENST00000309546 PGAM1P18669 254 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 FBLP22087 321 aaKnown RBP18.63■□□□□ 0.57
LIME1-201ENST00000309546 ARF3P61204 181 aaPredicted RBP18.63■□□□□ 0.57
LIME1-201ENST00000309546 OCA2Q04671 838 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 AIMP2Q13155 320 aaKnown RBP18.63■□□□□ 0.57
LIME1-201ENST00000309546 MUM1Q2TAK8 710 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 THEMIS2Q5TEJ8 643 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 FBXO42Q6P3S6 717 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 CLEC18BQ6UXF7 455 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 PIWIL4Q7Z3Z4 852 aaKnown RBP18.63■□□□□ 0.57
LIME1-201ENST00000309546 CSNK1A1LQ8N752 337 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 CLEC18CQ8NCF0 446 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 TM9SF4Q92544 642 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 INPP5DQ92835 1189 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 C10orf90Q96M02 699 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 CRB3Q9BUF7 120 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 DHRS7Q9Y394 339 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 COMMD10Q9Y6G5 202 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 DOCK10Q96BY6 2186 aa18.63■□□□□ 0.57
LIME1-201ENST00000309546 IGKV1-8A0A0C4DH67 115 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 DNALI1O14645 258 aaPredicted RBP18.62■□□□□ 0.57
LIME1-201ENST00000309546 ZBTB14O43829 449 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 HAUS5O94927 633 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 CRYMQ14894 314 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 TUBB8Q3ZCM7 444 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 IRAK1BP1Q5VVH5 260 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 PRAMEF13Q5VWM6 474 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 PRMT9Q6P2P2 845 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 UBE2R2Q712K3 238 aaPredicted RBP18.62■□□□□ 0.57
LIME1-201ENST00000309546 PAQR7Q86WK9 346 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 ASB11Q8WXH4 323 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 MIEF2Q96C03 454 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 NDNQ99608 321 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 AARSD1Q9BTE6 412 aaKnown RBP18.62■□□□□ 0.57
LIME1-201ENST00000309546 YIPF2Q9BWQ6 316 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 SLC29A3Q9BZD2 475 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 ILKAPQ9H0C8 392 aaPredicted RBP18.62■□□□□ 0.57
LIME1-201ENST00000309546 SYNPO2LQ9H987 977 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 SEMA3GQ9NS98 782 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 UTP6Q9NYH9 597 aaKnown RBP18.62■□□□□ 0.57
LIME1-201ENST00000309546 KLHL42Q9P2K6 505 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 ZNF282Q9UDV7 671 aaPredicted RBP18.62■□□□□ 0.57
LIME1-201ENST00000309546 PCYOX1Q9UHG3 505 aa18.62■□□□□ 0.57
LIME1-201ENST00000309546 TRMT6Q9UJA5 497 aaKnown RBP18.62■□□□□ 0.57
LIME1-201ENST00000309546 COL12A1Q99715 3063 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 FLNCQ14315 2725 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 VSTM2BA6NLU5 285 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 E7ENX8 843 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 CES2O00748 559 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 FFAR3O14843 346 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 GPR42O15529 346 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 TAP2Q03519 686 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 PRDX1Q06830 199 aaKnown RBP18.61■□□□□ 0.57
LIME1-201ENST00000309546 KLC1Q07866 573 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 DHX9Q08211 1270 aaKnown RBP18.61■□□□□ 0.57
LIME1-201ENST00000309546 PTK6Q13882 451 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 HKDC1Q2TB90 917 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 PRTGQ2VWP7 1150 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 PLEKHN1Q494U1 663 aaPredicted RBP18.61■□□□□ 0.57
LIME1-201ENST00000309546 KIRREL2Q6UWL6 708 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 PARP9Q8IXQ6 854 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 IQCKQ8N0W5 287 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 ZADH2Q8N4Q0 377 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 FBXO15Q8NCQ5 510 aaPredicted RBP18.61■□□□□ 0.57
LIME1-201ENST00000309546 STT3BQ8TCJ2 826 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 RERGQ96A58 199 aaPredicted RBP18.61■□□□□ 0.57
LIME1-201ENST00000309546 NACC2Q96BF6 587 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 KCNF1Q9H3M0 494 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 ZBTB20Q9HC78 741 aaPredicted RBP18.61■□□□□ 0.57
LIME1-201ENST00000309546 RUVBL1Q9Y265 456 aaKnown RBP18.61■□□□□ 0.57
LIME1-201ENST00000309546 B3GNT3Q9Y2A9 372 aa18.61■□□□□ 0.57
LIME1-201ENST00000309546 BLACEA4D250 179 aa18.6■□□□□ 0.57
LIME1-201ENST00000309546 AGFG2O95081 481 aa18.6■□□□□ 0.57
LIME1-201ENST00000309546 ZGLP1P0C6A0 271 aa18.6■□□□□ 0.57
LIME1-201ENST00000309546 EZRP15311 586 aaKnown RBP18.6■□□□□ 0.57
LIME1-201ENST00000309546 IMPA1P29218 277 aa18.6■□□□□ 0.57
LIME1-201ENST00000309546 CARSP49589 748 aaKnown RBP18.6■□□□□ 0.57
LIME1-201ENST00000309546 SOX8P57073 446 aa18.6■□□□□ 0.57
LIME1-201ENST00000309546 VWA2Q5GFL6 755 aa18.6■□□□□ 0.57
LIME1-201ENST00000309546 FHL5Q5TD97 284 aa18.6■□□□□ 0.57
LIME1-201ENST00000309546 ZNF425Q6IV72 752 aa18.6■□□□□ 0.57
LIME1-201ENST00000309546 CYHR1Q6ZMK1 362 aa18.6■□□□□ 0.57
LIME1-201ENST00000309546 PLD3Q8IV08 490 aa18.6■□□□□ 0.57
LIME1-201ENST00000309546 GABPB2Q8TAK5 448 aaPredicted RBP18.6■□□□□ 0.57
LIME1-201ENST00000309546 VPS50Q96JG6 964 aa18.6■□□□□ 0.57
LIME1-201ENST00000309546 CAPZA3Q96KX2 299 aa18.6■□□□□ 0.57
LIME1-201ENST00000309546 CUEDC1Q9NWM3 386 aaPredicted RBP18.6■□□□□ 0.57
LIME1-201ENST00000309546 C3orf18Q9UK00 162 aa18.6■□□□□ 0.57
LIME1-201ENST00000309546 ESPL1Q14674 2120 aa18.59■□□□□ 0.57
LIME1-201ENST00000309546 TCP11X1B4DZS4 312 aa18.59■□□□□ 0.57
LIME1-201ENST00000309546 GFYI3L273 518 aa18.59■□□□□ 0.57
LIME1-201ENST00000309546 MAP2K7O14733 419 aa18.59■□□□□ 0.57
LIME1-201ENST00000309546 HAT1O14929 419 aa18.59■□□□□ 0.57
LIME1-201ENST00000309546 PRPF4O43172 522 aaKnown RBP eCLIP18.59■□□□□ 0.572e-9■■□□□ 14.4
LIME1-201ENST00000309546 TCP1P17987 556 aaKnown RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms