RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 CHMP1BQ7LBR1 199 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 B3GALT6Q96L58 329 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 YIPF2Q9BWQ6 316 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 RBPJLQ9UBG7 517 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 RNF11Q9Y3C5 154 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 GSTT2P0CG29 244 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 GSTT2BP0CG30 244 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 PON2Q15165 354 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 CYBRD1Q53TN4 286 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 RNASE12Q5GAN4 147 aaKnown RBP18.81■□□□□ 0.6
USP48-201ENST00000308271 C10orf62Q5T681 223 aaPredicted RBP18.81■□□□□ 0.6
USP48-201ENST00000308271 MAVSQ7Z434 540 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 PYCR2Q96C36 320 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 TTPALQ9BTX7 342 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 CD244Q9BZW8 370 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 MARCH4Q9P2E8 410 aaPredicted RBP18.81■□□□□ 0.6
USP48-201ENST00000308271 CLEC4AQ9UMR7 237 aa18.81■□□□□ 0.6
USP48-201ENST00000308271 TSPAN4O14817 238 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 REM1O75628 298 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 NPRL3Q12980 569 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 PIWIL3Q7Z3Z3 882 aaKnown RBP18.8■□□□□ 0.6
USP48-201ENST00000308271 PIGXQ8TBF5 258 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 CACNG4Q9UBN1 327 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 MAPK12P53778 367 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 VMACQ2NL98 169 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 PNCKQ6P2M8 343 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 SLC35A5Q9BS91 424 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 HTATIP2Q9BUP3 242 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 MIR1-1HGQ9H1L0 117 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 TRAV19A0A0A6YYK7 116 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 A0A0G2JLL6 359 aaPredicted RBP18.8■□□□□ 0.6
USP48-201ENST00000308271 MRPS14O60783 128 aaKnown RBP18.8■□□□□ 0.6
USP48-201ENST00000308271 KDELR2P33947 212 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 OR1D2P34982 312 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 HNRNPFP52597 415 aaKnown RBP18.8■□□□□ 0.6
USP48-201ENST00000308271 ENPP6Q6UWR7 440 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 RANBP10Q6VN20 620 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 PRRT2Q7Z6L0 340 aaPredicted RBP18.8■□□□□ 0.6
USP48-201ENST00000308271 UMODL1-AS1Q8N2C9 162 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 PLD4Q96BZ4 506 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 C1orf74Q96LT6 269 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 SACM1LQ9NTJ5 587 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 PLCH1Q4KWH8 1693 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 TJP1Q07157 1748 aa18.8■□□□□ 0.6
USP48-201ENST00000308271 A0A1W2PRB8 838 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 A0A1W2PRG6 482 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 GRXCR2A6NFK2 248 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 PRAMEF11O60813 436 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 TBX18O95935 607 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 PCSK6P29122 969 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 ZNF467Q7Z7K2 595 aaPredicted RBP18.79■□□□□ 0.6
USP48-201ENST00000308271 TMEM203Q969S6 136 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 CCDC32Q9BV29 185 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 UCK2Q9BZX2 261 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 WDR70Q9NW82 654 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 TUBGCP6Q96RT7 1819 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 CACNA1SQ13698 1873 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 UBR2Q8IWV8 1755 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 TRBC2A0A5B9 178 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 ACOT8O14734 319 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 KLHL18O94889 574 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 CDK6Q00534 326 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 CBLBQ13191 982 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 APOFQ13790 326 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 CCDC157Q569K6 752 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 VARS2Q5ST30 1063 aaKnown RBP18.79■□□□□ 0.6
USP48-201ENST00000308271 C9orf64Q5T6V5 341 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 DSG4Q86SJ6 1040 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 FAM46DQ8NEK8 389 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 AP2M1Q96CW1 435 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 GSDMCQ9BYG8 508 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 ZNF510Q9Y2H8 683 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 BEST1O76090 585 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 RPS24P62847 133 aaKnown RBP18.79■□□□□ 0.6
USP48-201ENST00000308271 OR4D1Q15615 310 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 CRB2Q5IJ48 1285 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 MS4A13Q5J8X5 152 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 IDNKQ5T6J7 187 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 ZSWIM9Q86XI8 627 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 IFNLR1Q8IU57 520 aaPredicted RBP18.79■□□□□ 0.6
USP48-201ENST00000308271 DTWD1Q8N5C7 304 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 AQP11Q8NBQ7 271 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 TBC1D15Q8TC07 691 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 ANKRD49Q8WVL7 239 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 PDCD10Q9BUL8 212 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 COL2A1P02458 1487 aaPredicted RBP18.79■□□□□ 0.6
USP48-201ENST00000308271 A8MV72 311 aaPredicted RBP18.79■□□□□ 0.6
USP48-201ENST00000308271 I3L521 148 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 NUAK1O60285 661 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 CBSLP0DN79 551 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 CD247P20963 164 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 ACSL1P33121 698 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 CBSP35520 551 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 CSTF1Q05048 431 aaKnown RBP18.79■□□□□ 0.6
USP48-201ENST00000308271 ADNP2Q6IQ32 1131 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 USP50Q70EL3 339 aaPredicted RBP18.79■□□□□ 0.6
USP48-201ENST00000308271 ZNF438Q7Z4V0 828 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 TMEM80Q96HE8 168 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 IL1RAPQ9NPH3 570 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 C14orf119Q9NWQ9 140 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms