RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 KANTRA0A1W2PQU2 76 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 TSPAN6O43657 245 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 TSPAN3O60637 253 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 TRBC1P01850 177 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 ZNF423Q2M1K9 1284 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 NKAPLQ5M9Q1 402 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 PTCHD4Q6ZW05 846 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 MYOCQ99972 504 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 C11orf84Q9BUA3 381 aaPredicted RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 CXorf21Q9HAI6 301 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 UCKL1Q9NWZ5 548 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 SHANK3Q9BYB0 1731 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 NSG1A0A0A6YYJ2 146 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 A0A1W2PRG6 482 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 HSPA12AO43301 675 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 SSNA1O43805 119 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 CRTAPO75718 401 aaPredicted RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 C2P06681 752 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 KLRC2P26717 231 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 STT3AP46977 705 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 OMPP47874 163 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 SELENOVP59797 346 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 DCDC5Q6ZRR9 648 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 LRRC56Q8IYG6 542 aaPredicted RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 VANGL1Q8TAA9 524 aaPredicted RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 RGMAQ96B86 450 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 SUSD3Q96L08 255 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 TECTBQ96PL2 329 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 PBDC1Q9BVG4 233 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 TMEM248Q9NWD8 314 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 A0A0A6YYH2 397 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 A0A0G2JLL6 359 aaPredicted RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 LOC100130705A0A1B0GUX0 176 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 A6NJ64 397 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 RENP00797 406 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 ECHS1P30084 290 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 LEPRP48357 1165 aaKnown RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 MERTKQ12866 999 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 KDELC1Q6UW63 502 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 PRRT2Q7Z6L0 340 aaPredicted RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 NECTIN4Q96NY8 510 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 IGKV6D-41A0A0C4DH26 115 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 SLC25A14O95258 325 aaPredicted RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 CYP17A1P05093 508 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 CD86P42081 329 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 MAPK12P53778 367 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 SLC16A1P53985 500 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 ZNF763Q0D2J5 394 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 SLC2A14Q8TDB8 520 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 SNX27Q96L92 541 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 KCNIP2Q9NS61 270 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 GMPR2Q9P2T1 348 aaKnown RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 SCN1AP35498 2009 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 GLYATL1P3A0A0U1RQE8 302 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 TGOLN2O43493 480 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 UGT2B4P06133 528 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 SAGP10523 405 aaPredicted RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 MYCLP1P12525 358 aaPredicted RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 UBA1P22314 1058 aaKnown RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 OXTRP30559 389 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 ARHGAP11AQ6P4F7 1023 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 RNF165Q6ZSG1 346 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 GPR135Q8IZ08 494 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 PIH1D2Q8WWB5 315 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 PHF12Q96QT6 1004 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 NDNQ99608 321 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 IER2Q9BTL4 223 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 ANKRD60Q9BZ19 345 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 EFCAB9A8MZ26 197 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 ZNF208O43345 1280 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 FXNQ16595 210 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 DOK6Q6PKX4 331 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 CYP4X1Q8N118 509 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 GIPC3Q8TF64 312 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 L3HYPDHQ96EM0 354 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 ZFYVE19Q96K21 471 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 DOHHQ9BU89 302 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 KCNH6Q9H252 994 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 MKKSQ9NPJ1 570 aaPredicted RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 CCM2LQ9NUG4 571 aaPredicted RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 TMEM98Q9Y2Y6 226 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 NOX1Q9Y5S8 564 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 FFAR2O15552 330 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 ICAM2P13598 275 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 CPEP16870 476 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 TBPP20226 339 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 BGNP21810 368 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 PGS1Q32NB8 556 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 TIGD2Q4W5G0 525 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 GTF2IRD2BQ6EKJ0 949 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 PSRC1Q6PGN9 363 aaPredicted RBP3.92□□□□□ -1.78
USH2A-201ENST00000307340 GTF2IRD2Q86UP8 949 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 TANKQ92844 425 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 ZSWIM3Q96MP5 696 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 PREBQ9HCU5 417 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 NT5MQ9NPB1 228 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 FAM53CQ9NYF3 392 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 VPS29Q9UBQ0 182 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 ERVK-19Q9WJR5 959 aa3.92□□□□□ -1.78
USH2A-201ENST00000307340 LOC285556D6RIA3 1793 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms