RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 HM13Q8TCT9 377 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 ZNF480Q8WV37 535 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 STARD8Q92502 1023 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 TFAP2CQ92754 450 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 GFM2Q969S9 779 aaKnown RBP12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 REPS1Q96D71 796 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 FAM120BQ96EK7 910 aaKnown RBP12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 VPS50Q96JG6 964 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 EGLN2Q96KS0 407 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 CPPED1Q9BRF8 314 aaPredicted RBP12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 TBCDQ9BTW9 1192 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 DPEP2Q9H4A9 486 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 KAT8Q9H7Z6 458 aaKnown RBP12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 ADGRE2Q9UHX3 823 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 DYRK1BQ9Y463 629 aa12.52□□□□□ -0.41
SPTLC1-201ENST00000262554 CXCR6O00574 342 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 RFXANKO14593 260 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 ACOX3O15254 700 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 CLOCKO15516 846 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 DEAF1O75398 565 aaPredicted RBP12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 POP7O75817 140 aaKnown RBP12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 KAT7O95251 611 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 CLPTM1O96005 669 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 MT-ND1P03886 318 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 GJA4P35212 333 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 GRIA2P42262 883 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 TBPL1P62380 186 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 CNTN1Q12860 1018 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 MED27Q6P2C8 311 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 CRTC3Q6UUV7 619 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 NUDT18Q6ZVK8 323 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 ANKRD46Q86W74 232 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 OR52E4Q8NGH9 312 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 OR9A1PQ8NGU1 263 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 POP5Q969H6 163 aaKnown RBP12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 NEIL2Q969S2 332 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 FAM162AQ96A26 154 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 ERLEC1Q96DZ1 483 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 HHIPQ96QV1 700 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 PRPF18Q99633 342 aaKnown RBP12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 INPP5KQ9BT40 448 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 ITM2CQ9NQX7 267 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 SLC6A13Q9NSD5 602 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 PNPLA3Q9NST1 481 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 LIMD1Q9UGP4 676 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 CDH7Q9ULB5 785 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 MAPRE3Q9UPY8 281 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 FADS3Q9Y5Q0 445 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 MGAT4DA6NG13 374 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 PGM3O95394 542 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 GSNP06396 782 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 PBX2P40425 430 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 EIF2DP41214 584 aaKnown RBP12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 ASMTP46597 345 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 TRPC1P48995 793 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 MTAPQ13126 283 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 TSTA3Q13630 321 aaPredicted RBP12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 E2F2Q14209 437 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 STARD3Q14849 445 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 SHHQ15465 462 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 DUOXA1Q1HG43 343 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 SPIN4Q56A73 249 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 OR4F3Q6IEY1 312 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 ISLR2Q6UXK2 745 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 SLCO4C1Q6ZQN7 724 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 TMPRSS11BQ86T26 416 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 CALHM3Q86XJ0 350 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 ZNF547Q8IVP9 402 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 PHACTR4Q8IZ21 702 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 OR7G3Q8NG95 312 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 OR7A2PQ8NGA2 310 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 TSC22D3Q99576 134 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 NDUFA13Q9P0J0 144 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 PADI4Q9UM07 663 aa12.51□□□□□ -0.41
SPTLC1-201ENST00000262554 CHD9Q3L8U1 2897 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 SMIM31A0A1B0GVY4 71 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 MAGEB17A8MXT2 336 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 EI24O14681 340 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 FPGTO14772 594 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 KIF1CO43896 1103 aaKnown RBP12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 APODP05090 189 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 RETP07949 1114 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 PABPC4LP0CB38 370 aaKnown RBP12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 COX7A2P14406 83 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 ZNF23P17027 643 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 HOXB9P17482 250 aaPredicted RBP12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 PTPN6P29350 595 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 RPL5P46777 297 aaKnown RBP12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 C21orf58P58505 322 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 ABHD18Q0P651 414 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 MERTKQ12866 999 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 NFE2L1Q14494 772 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 PAGE2BQ5JRK9 111 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 C10orf62Q5T681 223 aaPredicted RBP12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 EGFLAMQ63HQ2 1017 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 UNC5DQ6UXZ4 953 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 ADAMTSL4Q6UY14 1074 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 HUS1BQ8NHY5 278 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 FBXO30Q8TB52 745 aa12.5□□□□□ -0.41
SPTLC1-201ENST00000262554 NCLNQ969V3 563 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms