RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 C1orf109Q9NX04 203 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 NOP53Q9NZM5 478 aaKnown RBP16.3■□□□□ 0.2
CLN3-252ENST00000636907 MUTYHQ9UIF7 546 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 INVSQ9Y283 1065 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 LRP4O75096 1905 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 A0A088AWK7 358 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 PRAMEF33A0A0G2JMD5 474 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 ZNF839A8K0R7 811 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 MGRN1O60291 552 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 RSL1D1O76021 490 aaKnown RBP16.29■□□□□ 0.2
CLN3-252ENST00000636907 DCNP07585 359 aaKnown RBP16.29■□□□□ 0.2
CLN3-252ENST00000636907 THEGLP0DJG4 465 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 C1GALT1C1LP0DN25 315 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 MTHFD1P11586 935 aaKnown RBP16.29■□□□□ 0.2
CLN3-252ENST00000636907 PRPH2P23942 346 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 ACTR1BP42025 376 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 RPS9P46781 194 aaKnown RBP16.29■□□□□ 0.2
CLN3-252ENST00000636907 ZFP36L2P47974 494 aaKnown RBP16.29■□□□□ 0.2
CLN3-252ENST00000636907 ACTR1AP61163 376 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 SLBPQ14493 270 aaKnown RBP eCLIP16.29■□□□□ 0.2
CLN3-252ENST00000636907 KRT33BQ14525 404 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 MMEL1Q495T6 779 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 SLC30A9Q6PML9 568 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 CYP20A1Q6UW02 462 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 NXPE4Q6UWF7 544 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 ABRAXAS1Q6UWZ7 409 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 SCUBE1Q8IWY4 988 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 ULK2Q8IYT8 1036 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 GJD3Q8N144 294 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 DEFB119Q8N690 84 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 LINC01555Q8NAE3 123 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 SLC6A18Q96N87 628 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 MRPL1Q9BYD6 325 aaKnown RBP16.29■□□□□ 0.2
CLN3-252ENST00000636907 GPR27Q9NS67 375 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 TRNAU1APQ9NX07 287 aaKnown RBP16.29■□□□□ 0.2
CLN3-252ENST00000636907 ZIM2Q9NZV7 527 aa16.29■□□□□ 0.2
CLN3-252ENST00000636907 A0A1W2PPV9 198 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 NRP2O60462 931 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 NDUFS2O75306 463 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 SLC22A3O75751 556 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 CAPN3P20807 821 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 RAP1GDS1P52306 607 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 ZNF33BQ06732 778 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 MAD2L1Q13257 205 aaPredicted RBP16.28■□□□□ 0.2
CLN3-252ENST00000636907 ART3Q13508 389 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 DDX39BQ13838 428 aaKnown RBP16.28■□□□□ 0.2
CLN3-252ENST00000636907 KIAA0040Q15053 153 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 ADNP2Q6IQ32 1131 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 BLOC1S3Q6QNY0 202 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 C16orf89Q6UX73 402 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 NRROSQ86YC3 692 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 CAMKK1Q8N5S9 505 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 OR7G3Q8NG95 312 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 OR52E1Q8NGJ3 308 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 SMPDL3AQ92484 453 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 MTERF1Q99551 399 aaKnown RBP16.28■□□□□ 0.2
CLN3-252ENST00000636907 HAUS8Q9BT25 410 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 EFCAB11Q9BUY7 163 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 ACAT2Q9BWD1 397 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 SPNS1Q9H2V7 528 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 EHD1Q9H4M9 534 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 ACTL8Q9H568 366 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 XKR8Q9H6D3 395 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 GEMIN8Q9NWZ8 242 aaKnown RBP16.28■□□□□ 0.2
CLN3-252ENST00000636907 TAC3Q9UHF0 121 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 EIF3LQ9Y262 564 aaKnown RBP16.28■□□□□ 0.2
CLN3-252ENST00000636907 SIT1Q9Y3P8 196 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 PCDHGA11Q9Y5H2 935 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 DGKBQ9Y6T7 804 aa16.28■□□□□ 0.2
CLN3-252ENST00000636907 NPIPB8E9PQR5 432 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 ANKRD28O15084 1053 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 TNFP01375 233 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 PCNAP12004 261 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 CDH1P12830 882 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 IL12AP29459 219 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 PKLRP30613 574 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 RAB28P51157 221 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 YBX1P67809 324 aaKnown RBP16.27■□□□□ 0.2
CLN3-252ENST00000636907 TBL3Q12788 808 aaKnown RBP16.27■□□□□ 0.2
CLN3-252ENST00000636907 CSTF3Q12996 717 aaKnown RBP16.27■□□□□ 0.2
CLN3-252ENST00000636907 EIF2B5Q13144 721 aaKnown RBP16.27■□□□□ 0.2
CLN3-252ENST00000636907 VPS26BQ4G0F5 336 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 MED27Q6P2C8 311 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 WASH2PQ6VEQ5 465 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 RAB42Q8N4Z0 105 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 PROKR1Q8TCW9 393 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 SH3KBP1Q96B97 665 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 CMTM7Q96FZ5 175 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 APIPQ96GX9 242 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 TCEAL2Q9H3H9 227 aaPredicted RBP16.27■□□□□ 0.2
CLN3-252ENST00000636907 DENND2DQ9H6A0 471 aaPredicted RBP16.27■□□□□ 0.2
CLN3-252ENST00000636907 SLC52A3Q9NQ40 469 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 WASH6PQ9NQA3 447 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 ASIC5Q9NY37 505 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 PCOLCE2Q9UKZ9 415 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 HEBP2Q9Y5Z4 205 aa16.27■□□□□ 0.2
CLN3-252ENST00000636907 SPTY2D1-AS1A0A0U1RR47 76 aa16.27■□□□□ 0.19
CLN3-252ENST00000636907 PIPSLA2A3N6 862 aa16.27■□□□□ 0.19
CLN3-252ENST00000636907 METTL12A8MUP2 240 aa16.27■□□□□ 0.19
CLN3-252ENST00000636907 MRASO14807 208 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms