RNA–Protein interactions for RNA: ENST00000617456.1

GPC6-202, Transcript of glypican 6, humanhuman

TSL 3 BASIC

Gene GPC6, Length 792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-202ENST00000617456 SLC38A9Q8NBW4 561 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 TOR1AIP2Q8NFQ8 470 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 IPMKQ8NFU5 416 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 OR2L2Q8NH16 312 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 BLOC1S5Q8TDH9 187 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 ADAMTS17Q8TE56 1095 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 DYDC1Q8WWB3 177 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 KRT35Q92764 455 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 AIFM2Q9BRQ8 373 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 TUBB2BQ9BVA1 445 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 HEMGNQ9BXL5 484 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 DRC3Q9H069 523 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 ILKAPQ9H0C8 392 aaPredicted RBP8.28□□□□□ -1.08
GPC6-202ENST00000617456 CENPHQ9H3R5 247 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 SERHL2Q9H4I8 314 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 SYTL2Q9HCH5 934 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 UBP1Q9NZI7 540 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 NOP53Q9NZM5 478 aaKnown RBP8.28□□□□□ -1.08
GPC6-202ENST00000617456 AMFRQ9UKV5 643 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 TCFL5Q9UL49 500 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 PSMD13Q9UNM6 376 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 FAM32AQ9Y421 112 aaKnown RBP8.28□□□□□ -1.08
GPC6-202ENST00000617456 PCDHGA10Q9Y5H3 936 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 HEBP2Q9Y5Z4 205 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 COLEC10Q9Y6Z7 277 aa8.28□□□□□ -1.08
GPC6-202ENST00000617456 SETD2Q9BYW2 2564 aaPredicted RBP8.27□□□□□ -1.08
GPC6-202ENST00000617456 PIKFYVEQ9Y2I7 2098 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 IGLV3-16A0A075B6K0 115 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 OR6C74A6NCV1 312 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 TLCD2A6NGC4 264 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 MEN1O00255 615 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 GAPDHSO14556 408 aaPredicted RBP8.27□□□□□ -1.09
GPC6-202ENST00000617456 EIF3HO15372 352 aaKnown RBP eCLIP8.27□□□□□ -1.09
GPC6-202ENST00000617456 PRAMEF1O95521 474 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 RAB40ALP0C0E4 278 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 M6PRP20645 277 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 PBLDP30039 288 aaPredicted RBP8.27□□□□□ -1.09
GPC6-202ENST00000617456 GLRBP48167 497 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 CCT5P48643 541 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 MARCKSL1P49006 195 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 BLVRAP53004 296 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 RRADP55042 308 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 GSDMDP57764 484 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 XIAPP98170 497 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 RELQ04864 619 aaPredicted RBP8.27□□□□□ -1.09
GPC6-202ENST00000617456 RUNX1T1Q06455 604 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 KLF1Q13351 362 aaPredicted RBP8.27□□□□□ -1.09
GPC6-202ENST00000617456 NFE2L1Q14494 772 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 RPE65Q16518 533 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 P3H1Q32P28 736 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 PTCHD3Q3KNS1 767 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 TMTC4Q5T4D3 741 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 KCTD11Q693B1 232 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 ARMC6Q6NXE6 501 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 ZNF449Q6P9G9 518 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 DARS2Q6PI48 645 aaKnown RBP8.27□□□□□ -1.09
GPC6-202ENST00000617456 TMEM220Q6QAJ8 160 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 C6orf89Q6UWU4 347 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 MED25Q71SY5 747 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 SNX20Q7Z614 316 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 LINC00523Q86TU6 105 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 DSELQ8IZU8 1212 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 D2HGDHQ8N465 521 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 NKAIN3Q8N8D7 197 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 TMEM102Q8N9M5 508 aaPredicted RBP8.27□□□□□ -1.09
GPC6-202ENST00000617456 GLIS1Q8NBF1 620 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 CPT1BQ92523 772 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 PEX13Q92968 403 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 ZNF501Q96CX3 271 aaPredicted RBP8.27□□□□□ -1.09
GPC6-202ENST00000617456 PPM1MQ96MI6 270 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 RBM14Q96PK6 669 aaKnown RBP8.27□□□□□ -1.09
GPC6-202ENST00000617456 SMAD5Q99717 465 aaKnown RBP8.27□□□□□ -1.09
GPC6-202ENST00000617456 TLR10Q9BXR5 811 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 FAM129AQ9BZQ8 928 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 UNKQ9C0B0 810 aaKnown RBP8.27□□□□□ -1.09
GPC6-202ENST00000617456 ASB8Q9H765 288 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 LRRC40Q9H9A6 602 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 VPS37BQ9H9H4 285 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 BPIFA1Q9NP55 256 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 IMP3Q9NV31 184 aaKnown RBP8.27□□□□□ -1.09
GPC6-202ENST00000617456 HRASLS2Q9NWW9 162 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 ZC3H7BQ9UGR2 993 aaKnown RBP8.27□□□□□ -1.09
GPC6-202ENST00000617456 RIMKLBQ9ULI2 386 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 B3GNT3Q9Y2A9 372 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 COPG1Q9Y678 874 aaKnown RBP8.27□□□□□ -1.09
GPC6-202ENST00000617456 CFAP20Q9Y6A4 193 aaKnown RBP8.27□□□□□ -1.09
GPC6-202ENST00000617456 CCDC168Q8NDH2 2452 aa8.27□□□□□ -1.09
GPC6-202ENST00000617456 OTOGQ6ZRI0 2925 aa8.26□□□□□ -1.09
GPC6-202ENST00000617456 ITPR3Q14573 2671 aa8.26□□□□□ -1.09
GPC6-202ENST00000617456 TRBV5-4A0A0C4DH59 114 aa8.26□□□□□ -1.09
GPC6-202ENST00000617456 RCCD1A6NED2 376 aa8.26□□□□□ -1.09
GPC6-202ENST00000617456 OR5K3A6NET4 321 aa8.26□□□□□ -1.09
GPC6-202ENST00000617456 SOWAHDA6NJG2 315 aa8.26□□□□□ -1.09
GPC6-202ENST00000617456 F8W8V4 182 aa8.26□□□□□ -1.09
GPC6-202ENST00000617456 KCNN4O15554 427 aa8.26□□□□□ -1.09
GPC6-202ENST00000617456 LRRTM2O43300 516 aa8.26□□□□□ -1.09
GPC6-202ENST00000617456 HNRNPRO43390 633 aaKnown RBP8.26□□□□□ -1.09
GPC6-202ENST00000617456 UGT1A9O60656 530 aa8.26□□□□□ -1.09
GPC6-202ENST00000617456 AP2A2O94973 939 aa8.26□□□□□ -1.09
GPC6-202ENST00000617456 SEC31AO94979 1220 aaKnown RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms