RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 AURKBQ96GD4 344 aaPredicted RBP13.66□□□□□ -0.22
CPSF1-212ENST00000616140 ZFP3Q96NJ6 502 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 SLC29A3Q9BZD2 475 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 KCNN2Q9H2S1 579 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 MKL2Q9ULH7 1088 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 ASB3Q9Y575 518 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 MYO10Q9HD67 2058 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 MTMR11A4FU01 709 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 CLDN4O14493 209 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 XKRYO14609 159 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 GBAP04062 536 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 KLK1P06870 262 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 HAPLN1P10915 354 aaPredicted RBP13.66□□□□□ -0.22
CPSF1-212ENST00000616140 FPR1P21462 350 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 FAUP35544 74 aaKnown RBP13.66□□□□□ -0.22
CPSF1-212ENST00000616140 AVPR1BP47901 424 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 STARP49675 285 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 ARSFP54793 590 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 CLEC12AQ5QGZ9 265 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 NANOGP8Q6NSW7 305 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 PRR23BQ6ZRT6 265 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 IQCHQ86VS3 1027 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 KCT2Q8NC54 265 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 OR10H5Q8NGA6 315 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 TRMT61BQ9BVS5 477 aaKnown RBP13.66□□□□□ -0.22
CPSF1-212ENST00000616140 TXLNGYQ9BZA5 131 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 NANOGQ9H9S0 305 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 CERS4Q9HA82 394 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 NEK6Q9HC98 313 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 PTBP2Q9UKA9 531 aaKnown RBP13.66□□□□□ -0.22
CPSF1-212ENST00000616140 FAM25EA8MYX2 175 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 GMFGO60234 142 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 ACP5P13686 325 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 CPN2P22792 545 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 S100A1P23297 94 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 CDK6Q00534 326 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 TECRLQ5HYJ1 363 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 USP43Q70EL4 1123 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 NUDT13Q86X67 352 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 TMC8Q8IU68 726 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 COX18Q8N8Q8 333 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 PIK3R3Q92569 461 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 TMEM203Q969S6 136 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 CAPNS2Q96L46 248 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 TRNT1Q96Q11 434 aaKnown RBP13.66□□□□□ -0.22
CPSF1-212ENST00000616140 STRA6Q9BX79 667 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 BCL2L14Q9BZR8 327 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 SLC28A3Q9HAS3 691 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 TRBC2A0A5B9 178 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 DCLK1O15075 740 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 ALAS2P22557 587 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 DSTNP60981 165 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 RPL26P61254 145 aaKnown RBP13.66□□□□□ -0.22
CPSF1-212ENST00000616140 LRRC66Q68CR7 880 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 MBOAT1Q6ZNC8 495 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 OXR1Q8N573 874 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 HERVK_113Q902F9 699 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 DMRTB1Q96MA1 342 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 MED28Q9H204 178 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 TOR3AQ9H497 397 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 ADAMTS6Q9UKP5 1117 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 MYH15Q9Y2K3 1946 aa13.66□□□□□ -0.22
CPSF1-212ENST00000616140 PARP4Q9UKK3 1724 aaKnown RBP13.65□□□□□ -0.22
CPSF1-212ENST00000616140 ARVCFO00192 962 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 EBLN1P0CF75 366 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 ATP1B2P14415 290 aaPredicted RBP13.65□□□□□ -0.22
CPSF1-212ENST00000616140 ERVK-21P61565 698 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 TUBA4AP68366 448 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 TLE2Q04725 743 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 GRB14Q14449 540 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 ATAT1Q5SQI0 421 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 PRAMEF14Q5SWL7 426 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 PRAMEF13Q5VWM6 474 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 FAAH2Q6GMR7 532 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 AGTRAPQ6RW13 159 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 HAPLN2Q9GZV7 340 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 MKS1Q9NXB0 559 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 Q9Y3F1 56 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 CFAP20Q9Y6A4 193 aaKnown RBP13.65□□□□□ -0.22
CPSF1-212ENST00000616140 PRSS51A0A1B0GVH4 220 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 AREL1O15033 823 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 SLC11A1P49279 550 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 XKP51811 444 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 NCBP2P52298 156 aaKnown RBP eCLIP13.65□□□□□ -0.225e-6■■■□□ 15.2
CPSF1-212ENST00000616140 KLHL22Q53GT1 634 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 OLFML2AQ68BL7 652 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 KIAA1161Q6NSJ0 714 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 CYS1Q717R9 158 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 TAF8Q7Z7C8 310 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 JAZF1Q86VZ6 243 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 CEP97Q8IW35 865 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 CYB5D2Q8WUJ1 264 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 UFD1Q92890 307 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 PYURFQ96I23 114 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 PRICKLE1Q96MT3 831 aaPredicted RBP13.65□□□□□ -0.22
CPSF1-212ENST00000616140 SOX17Q9H6I2 414 aaPredicted RBP13.65□□□□□ -0.22
CPSF1-212ENST00000616140 RIMKLBQ9ULI2 386 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 ACOX3O15254 700 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 LDB2O43679 373 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 TGFBR2P37173 567 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms