RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 MROQ9BYG7 248 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 TM9SF3Q9HD45 589 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 C11orf16Q9NQ32 467 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 DNAJC11Q9NVH1 559 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 KCTD5Q9NXV2 234 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 CRNNQ9UBG3 495 aaPredicted RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 FZD4Q9ULV1 537 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 DLGAP4Q9Y2H0 992 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 A6NL46 340 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 MYL12BO14950 172 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 SULT1C4O75897 302 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 CD40LGP29965 261 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 MVKQ03426 396 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 NPRL3Q12980 569 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 MRPL28Q13084 256 aaKnown RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 IL18R1Q13478 541 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 SLC14A2Q15849 920 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 TSTQ16762 297 aaKnown RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 HKDC1Q2TB90 917 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 MFSD4BQ5TF39 518 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 ZNF691Q5VV52 312 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 THOC7Q6I9Y2 204 aaKnown RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 USP50Q70EL3 339 aaPredicted RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 RAVER1Q8IY67 606 aaKnown RBP12.26□□□□□ -0.45
LIG1-221ENST00000613670 CLECL1Q8IZS7 167 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 RNF175Q8N4F7 328 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 DPP10Q8N608 796 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 C11orf65Q8NCR3 313 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 OR6Q1Q8NGQ2 317 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 PIH1D2Q8WWB5 315 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 SIAEQ9HAT2 523 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 TPT1P8Q9HAU6 139 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 NEK6Q9HC98 313 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 HEBP1Q9NRV9 189 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 PEX16Q9Y5Y5 336 aa12.26□□□□□ -0.45
LIG1-221ENST00000613670 H7C4K7 107 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 SAP18O00422 153 aaKnown RBP12.25□□□□□ -0.45
LIG1-221ENST00000613670 ZNF140P52738 457 aaPredicted RBP12.25□□□□□ -0.45
LIG1-221ENST00000613670 CREMQ03060 361 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 NKG7Q16617 165 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 UAP1L1Q3KQV9 507 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 ATG9BQ674R7 924 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 FAM131AQ6UXB0 335 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 CEP68Q76N32 757 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 BHLHA9Q7RTU4 235 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 TMEM179BQ7Z7N9 219 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 KRT73Q86Y46 540 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 LGI4Q8N135 537 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 IPCEF1Q8WWN9 437 aaPredicted RBP12.25□□□□□ -0.45
LIG1-221ENST00000613670 STARD8Q92502 1023 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 BEX2Q9BXY8 128 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 SGK2Q9HBY8 427 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 GPR83Q9NYM4 423 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 RHCGQ9UBD6 479 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 B3GNT3Q9Y2A9 372 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 K7ERQ8 282 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 ARNTLO00327 626 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 OR10H3O60404 316 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 IGSF6O95976 241 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 TACR1P25103 407 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 SLC15A1P46059 708 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 ISL1P61371 349 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 VMACQ2NL98 169 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 CTSL3PQ5NE16 218 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 MANEALQ5VSG8 457 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 XAF1Q6GPH4 301 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 ERICH5Q6P6B1 374 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 ZZZ3Q8IYH5 903 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 C19orf18Q8NEA5 215 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 OR5AK3PQ8NH89 298 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 TMEM203Q969S6 136 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 TTPALQ9BTX7 342 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 DUSP26Q9BV47 211 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 KCNH6Q9H252 994 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 TRIT1Q9H3H1 467 aaKnown RBP12.25□□□□□ -0.45
LIG1-221ENST00000613670 GORASP2Q9H8Y8 452 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 CARS2Q9HA77 564 aaKnown RBP12.25□□□□□ -0.45
LIG1-221ENST00000613670 ZNF225Q9UK10 706 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 PCDHGB3Q9Y5G1 929 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 COQ9O75208 318 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 JUNBP17275 347 aaPredicted RBP12.25□□□□□ -0.45
LIG1-221ENST00000613670 ST3GAL4Q11206 333 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 OXA1LQ15070 435 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 ZNF648Q5T619 568 aaPredicted RBP12.25□□□□□ -0.45
LIG1-221ENST00000613670 DESI1Q6ICB0 168 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 RAB43Q86YS6 212 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 VANGL1Q8TAA9 524 aaPredicted RBP12.25□□□□□ -0.45
LIG1-221ENST00000613670 MBOAT4Q96T53 435 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 MMP27Q9H306 513 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 SLC32A1Q9H598 525 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 RPRD1BQ9NQG5 326 aaKnown RBP12.25□□□□□ -0.45
LIG1-221ENST00000613670 TRPC4Q9UBN4 977 aa12.25□□□□□ -0.45
LIG1-221ENST00000613670 COL11A1P12107 1806 aaPredicted RBP12.24□□□□□ -0.45
LIG1-221ENST00000613670 FAM220BPB1ANY3 271 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 IFNA14P01570 189 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 C9P02748 559 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 EBLN1P0CF75 366 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 SPAM1P38567 509 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 OLR1P78380 273 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 ALDH6A1Q02252 535 aaKnown RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms