RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TCEAL2Q9H3H9 227 aaPredicted RBP4.28□□□□□ -1.72
LINC00540-201ENST00000611481 EPS8L2Q9H6S3 715 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 RDH14Q9HBH5 336 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 GLOD4Q9HC38 313 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 KCNMB3Q9NPA1 279 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 EIF2B3Q9NR50 452 aaKnown RBP4.28□□□□□ -1.72
LINC00540-201ENST00000611481 TBC1D23Q9NUY8 699 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 SPASTQ9UBP0 616 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 ZNF212Q9UDV6 495 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 IPO11Q9UI26 975 aaKnown RBP4.28□□□□□ -1.72
LINC00540-201ENST00000611481 SERTAD3Q9UJW9 196 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 RPS6KA6Q9UK32 745 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 TMCC3Q9ULS5 477 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 C19orf53Q9UNZ5 99 aaPredicted RBP4.28□□□□□ -1.72
LINC00540-201ENST00000611481 NTNG1Q9Y2I2 539 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 ZNF711Q9Y462 761 aa4.28□□□□□ -1.72
LINC00540-201ENST00000611481 MEGF8Q7Z7M0 2845 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 ANK2Q01484 3957 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 FER1L5A0AVI2 2057 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 MDC1Q14676 2089 aaKnown RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 SPTY2D1-AS1A0A0U1RR47 76 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 hCG_1807616A0A1W2PRN6 198 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 MBD3L4A6NDZ8 208 aaPredicted RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 MBD3L3A6NE82 208 aaPredicted RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 CD8B2A6NJW9 211 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 LMO7DNF2Z398 122 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 E2F3O00716 465 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 MDM4O15151 490 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 CLDN3O15551 220 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 MSI1O43347 362 aaKnown RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 PLRG1O43660 514 aaKnown RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 EXOC3O60645 756 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 HUS1O60921 280 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 TOM1L1O75674 476 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 TJP3O95049 919 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 IL1BP01584 269 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 KRT19P08727 400 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 STSP08842 583 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 DLDP09622 509 aaKnown RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 NR2F1P10589 423 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 CYP11B2P19099 503 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 PSMA4P25789 261 aaKnown RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 CHMLP26374 656 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 PPIFP30405 207 aaKnown RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 HLA-FP30511 346 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 DRD3P35462 400 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 DLSTP36957 453 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 TNNT3P45378 269 aaPredicted RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 PEX3P56589 373 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 FOLH1Q04609 750 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 BOP1Q14137 746 aaKnown RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 TMEM132DQ14C87 1099 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 ANKRD1Q15327 319 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 DCAF12Q5T6F0 453 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 C10orf25Q5T742 122 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 ATPAF1Q5TC12 328 aaPredicted RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 SNX30Q5VWJ9 437 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 NAA35Q5VZE5 725 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 HMBOX1Q6NT76 420 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 DUS1LQ6P1R4 473 aaKnown RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 FAM171BQ6P995 826 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 ZNF449Q6P9G9 518 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 MOXD1Q6UVY6 613 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 ZNF813Q6ZN06 617 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 Q6ZWC4 215 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 ABI3BPQ7Z7G0 1075 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 ADIPOR2Q86V24 386 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 TMEM200AQ86VY9 491 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 FAM90A1Q86YD7 464 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 ARL6IP6Q8N6S5 226 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 TEX9Q8N6V9 391 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 CCDC148Q8NFR7 591 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 SCAMP5Q8TAC9 235 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 WFIKKN2Q8TEU8 576 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 DDI1Q8WTU0 396 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 CCDC47Q96A33 483 aaKnown RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 RNF125Q96EQ8 232 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 SNX18Q96RF0 628 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 SYT15Q9BQS2 421 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 REEP2Q9BRK0 252 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 XPO4Q9C0E2 1151 aaKnown RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 OR10A4Q9H209 315 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 IL25Q9H293 177 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 GRPEL1Q9HAV7 217 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 AGPAT4Q9NRZ5 378 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 ABCB8Q9NUT2 735 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 OCIAD1Q9NX40 245 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 DPP3Q9NY33 737 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 VPS54Q9P1Q0 977 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 APOBEC3BQ9UH17 382 aaKnown RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 ZDHHC8Q9ULC8 765 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 TMEM5Q9Y2B1 443 aa4.27□□□□□ -1.73
LINC00540-201ENST00000611481 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 KMT2CQ8NEZ4 4911 aaKnown RBP4.27□□□□□ -1.73
LINC00540-201ENST00000611481 SONP18583 2426 aaKnown RBP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.26□□□□□ -1.73
LINC00540-201ENST00000611481 BIRC6Q9NR09 4857 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 ARHGEF35A5YM69 484 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 ARGFXA6NJG6 315 aa4.26□□□□□ -1.73
LINC00540-201ENST00000611481 FAM90A8PA6NJQ4 464 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms