RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 ZNF304Q9HCX3 659 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 SLC6A20Q9NP91 592 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 MRPS30Q9NP92 439 aaKnown RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 ENAMQ9NRM1 1142 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 UTP6Q9NYH9 597 aaKnown RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 ZNF282Q9UDV7 671 aaPredicted RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 KLK4Q9Y5K2 254 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 HS3ST3B1Q9Y662 390 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 MED13Q9UHV7 2174 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 FAM237BA0A1B0GVD1 139 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 A0A1W2PPV9 198 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 MAGEB16A2A368 324 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 OR2A25A4D2G3 310 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 ARHGEF33A8MVX0 844 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 MYO1CO00159 1063 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 SOCS6O14544 535 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 MAP2K7O14733 419 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 PRPF4O43172 522 aaKnown RBP eCLIP9.36□□□□□ -0.91
VRK3-216ENST00000599342 NRP2O60462 931 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 PHF2O75151 1096 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 ALOX12BO75342 701 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 PSIP1O75475 530 aaKnown RBP9.36□□□□□ -0.91
VRK3-216ENST00000599342 SYF2O95926 243 aaKnown RBP9.36□□□□□ -0.91
VRK3-216ENST00000599342 ERGP11308 486 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 MLNP12872 115 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 FBLP22087 321 aaKnown RBP9.36□□□□□ -0.91
VRK3-216ENST00000599342 HSD17B2P37059 387 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 MAGEA6P43360 314 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 GLRBP48167 497 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 CARSP49589 748 aaKnown RBP9.36□□□□□ -0.91
VRK3-216ENST00000599342 ARHGAP19Q14CB8 494 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 NR6A1Q15406 480 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 EIF2S3LQ2VIR3 472 aaKnown RBP9.36□□□□□ -0.91
VRK3-216ENST00000599342 ACSBG2Q5FVE4 666 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.36□□□□□ -0.91
VRK3-216ENST00000599342 AGAP7PQ5VUJ5 663 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 ANKRD22Q5VYY1 191 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 SUSD1Q6UWL2 747 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 Q6ZS92 163 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 TMEM151BQ8IW70 566 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 CISD2Q8N5K1 135 aaKnown RBP9.36□□□□□ -0.91
VRK3-216ENST00000599342 RERGQ96A58 199 aaPredicted RBP9.36□□□□□ -0.91
VRK3-216ENST00000599342 MAGOHBQ96A72 148 aaKnown RBP9.36□□□□□ -0.91
VRK3-216ENST00000599342 MIEF2Q96C03 454 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 C19orf60Q96EN9 201 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 AGAP4Q96P64 663 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 NAP1L3Q99457 506 aaPredicted RBP9.36□□□□□ -0.91
VRK3-216ENST00000599342 WDR77Q9BQA1 342 aaPredicted RBP9.36□□□□□ -0.91
VRK3-216ENST00000599342 EPS8L2Q9H6S3 715 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 XAB2Q9HCS7 855 aaKnown RBP9.36□□□□□ -0.91
VRK3-216ENST00000599342 ASF1BQ9NVP2 202 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 TAC3Q9UHF0 121 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 PPP2R2CQ9Y2T4 447 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 COPG1Q9Y678 874 aaKnown RBP9.36□□□□□ -0.91
VRK3-216ENST00000599342 FER1L5A0AVI2 2057 aa9.36□□□□□ -0.91
VRK3-216ENST00000599342 COL12A1Q99715 3063 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 DOPEY2Q9Y3R5 2298 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 LOC105369274A0A096LPK9 316 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 LOC102723532A0A0G2JNH3 316 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 SDR42E2A6NKP2 422 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 VSTM2BA6NLU5 285 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 GOLGA8MH3BSY2 632 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 SEMA7AO75326 666 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 ANXA5P08758 320 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 ZGLP1P0C6A0 271 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 ACPPP15309 386 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 EZRP15311 586 aaKnown RBP9.35□□□□□ -0.91
VRK3-216ENST00000599342 PNLIPRP1P54315 467 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 CCZ1BP86790 482 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 CCZ1P86791 482 aaPredicted RBP9.35□□□□□ -0.91
VRK3-216ENST00000599342 KLC1Q07866 573 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 C4orf17Q53FE4 359 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 THEMIS2Q5TEJ8 643 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 ICE2Q659A1 982 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 CCDC137Q6PK04 289 aaKnown RBP9.35□□□□□ -0.91
VRK3-216ENST00000599342 KIRREL2Q6UWL6 708 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 NEK10Q6ZWH5 1172 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 CENPUQ71F23 418 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 ADCK2Q7Z695 626 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 CAND1Q86VP6 1230 aaKnown RBP9.35□□□□□ -0.91
VRK3-216ENST00000599342 REXO1L1PQ8IX06 675 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 PARP9Q8IXQ6 854 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 LMNTD2Q8IXW0 634 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 PRSS58Q8IYP2 241 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 OR4N4Q8N0Y3 316 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 DTWD1Q8N5C7 304 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 CSNK1A1LQ8N752 337 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 MCUQ8NE86 351 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 OR11G2Q8NGC1 345 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 STT3BQ8TCJ2 826 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 CALML6Q8TD86 181 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 PPP4R1Q8TF05 950 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 COG1Q8WTW3 980 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 KCNJ9Q92806 393 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 MVB12AQ96EY5 273 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 THOC3Q96J01 351 aaKnown RBP9.35□□□□□ -0.91
VRK3-216ENST00000599342 PBKQ96KB5 322 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 CNDP1Q96KN2 507 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 SERPINB12Q96P63 405 aa9.35□□□□□ -0.91
VRK3-216ENST00000599342 PLCD4Q9BRC7 762 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms