RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 UBAP2Q5T6F2 1119 aaKnown RBP10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 FAM69BQ5VUD6 431 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 FRMPD2BQ6IN97 320 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 LRRC8EQ6NSJ5 796 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 RHBDD2Q6NTF9 364 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 CYS1Q717R9 158 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 RNF44Q7L0R7 432 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 CCDC25Q86WR0 208 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 MCATQ8IVS2 390 aaKnown RBP10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 CEP97Q8IW35 865 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 PALM2Q8IXS6 379 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 SYTL1Q8IYJ3 562 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 MYO1HQ8N1T3 1032 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 ZNF655Q8N720 491 aaPredicted RBP10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 LSM14AQ8ND56 463 aaKnown RBP10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 MR1Q95460 341 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 ZUFSPQ96AP4 578 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 WBP1Q96G27 269 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 VPS39Q96JC1 886 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 GBP5Q96PP8 586 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 SCN2AQ99250 2005 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 DPH7Q9BTV6 452 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 RHOJQ9H4E5 214 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 ACTL8Q9H568 366 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 LRRC4CQ9HCJ2 640 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 INTS7Q9NVH2 962 aaKnown RBP10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 STOX2Q9P2F5 926 aaPredicted RBP10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 DHCR7Q9UBM7 475 aaKnown RBP10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 TAC3Q9UHF0 121 aa10.54□□□□□ -0.72
SHKBP1-206ENST00000595523 LOC105369274A0A096LPK9 316 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 LOC102723532A0A0G2JNH3 316 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 KIF2AO00139 706 aaPredicted RBP10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 TK2O00142 265 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 SLC16A5O15375 505 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 KATNA1O75449 491 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 CREG1O75629 220 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 WISP3O95389 354 aaPredicted RBP10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 MED26O95402 600 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 TUBB4AP04350 444 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 C8GP07360 202 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 GSTA2P09210 222 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 SAT1P21673 171 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 PTPN4P29074 926 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 ECHS1P30084 290 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 RPA3P35244 121 aaPredicted RBP10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 HSD17B2P37059 387 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 IL2P60568 153 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 TBPL1P62380 186 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 PRDX1Q06830 199 aaKnown RBP10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 TSTA3Q13630 321 aaPredicted RBP10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 IL10RAQ13651 578 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 ERV3-1Q14264 604 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 TAF1BQ53T94 588 aaPredicted RBP10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 ICE2Q659A1 982 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 ZNF425Q6IV72 752 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 C16orf46Q6P387 395 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 TLDC1Q6P9B6 456 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 SBSNQ6UWP8 590 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 C3orf62Q6ZUJ4 267 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 PAQR7Q86WK9 346 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 TMEM151BQ8IW70 566 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 GPR135Q8IZ08 494 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 OR4N4Q8N0Y3 316 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 ANKRD49Q8WVL7 239 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 N4BP2L2Q92802 583 aaPredicted RBP10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 PDLIM5Q96HC4 596 aaKnown RBP10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 GPR87Q9BY21 358 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 CAB39LQ9H9S4 337 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 PARVBQ9HBI1 364 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 SLC22A11Q9NSA0 550 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 STARD5Q9NSY2 213 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 CUEDC1Q9NWM3 386 aaPredicted RBP10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 NSMCE4AQ9NXX6 385 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 KCND3Q9UK17 655 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 SH2B3Q9UQQ2 575 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 MTO1Q9Y2Z2 717 aaKnown RBP10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 AP1M2Q9Y6Q5 423 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 NBASA2RRP1 2371 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 MYO18BQ8IUG5 2567 aa10.53□□□□□ -0.72
SHKBP1-206ENST00000595523 A0A0J9YVX5 310 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 CTAGE15A4D2H0 777 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 FITM1A5D6W6 292 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 ZNF839A8K0R7 811 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 CNOT3O75175 753 aaKnown RBP10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 FAM155BO75949 473 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 KLK3P07288 261 aaPredicted RBP10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 HBQ1P09105 142 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 RAB40ALP0C0E4 278 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 FAM87AP0C7U9 286 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 CTAGE8P0CG41 777 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 CMPK1P30085 196 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 VSX2P58304 361 aaPredicted RBP10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 EFTUD2Q15029 972 aaKnown RBP eCLIP10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 PPP1R3AQ16821 1122 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 KBTBD12Q3ZCT8 623 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 ZC3H12BQ5HYM0 836 aaKnown RBP10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 C1orf189Q5VU69 101 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 FBXO42Q6P3S6 717 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 AGTRAPQ6RW13 159 aa10.52□□□□□ -0.73
SHKBP1-206ENST00000595523 CTAGE6Q86UF2 777 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms