RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ZER1Q7Z7L7 766 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 ZNF431Q8TF32 576 aaPredicted RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 HPDLQ96IR7 371 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 RPL10LQ96L21 214 aaKnown RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 ZNF300Q96RE9 604 aaPredicted RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 SSX3Q99909 188 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 MRPL45Q9BRJ2 306 aaKnown RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 TRIM62Q9BVG3 475 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 KAT8Q9H7Z6 458 aaKnown RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 OSGIN1Q9UJX0 560 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 ZNF195O14628 629 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 RFPL3O75679 317 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 FADS2O95864 444 aaKnown RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 ACAA1P09110 424 aaPredicted RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 COX5BP10606 129 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 CAPN3P20807 821 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 TRHRP34981 398 aaPredicted RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 MADCAM1Q13477 382 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 EXOSC2Q13868 293 aaKnown RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 IRF3Q14653 427 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 PTPRCAPQ14761 206 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 FAM76BQ5HYJ3 339 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 C9orf131Q5VYM1 1079 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 ANKRD54Q6NXT1 300 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 EPGNQ6UW88 154 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 ZNF782Q6ZMW2 699 aaPredicted RBP10.57□□□□□ -0.72
CLK3-226ENST00000569406 NKAIN4Q8IVV8 208 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 PLD5Q8N7P1 536 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 CCNYQ8ND76 341 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 AKR7LQ8NHP1 331 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 TMEM40Q8WWA1 233 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 CEP41Q9BYV8 373 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 IL1RL2Q9HB29 575 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 ABCD2Q9UBJ2 740 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 UBQLN2Q9UHD9 624 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 USP18Q9UMW8 372 aa10.57□□□□□ -0.72
CLK3-226ENST00000569406 METTL21EPA6NDL7 271 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 PRPSAP2O60256 369 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 CCNB2O95067 398 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 APBB3O95704 486 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 IFNA7P01567 189 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 GPX4P36969 197 aaPredicted RBP10.56□□□□□ -0.72
CLK3-226ENST00000569406 CLCN7P51798 805 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 DEFA5Q01523 94 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 ROR1Q01973 937 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 QPRTQ15274 297 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 GLRA4Q5JXX5 417 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 ATRAIDQ6UW56 229 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 RBM23Q86U06 439 aaKnown RBP10.56□□□□□ -0.72
CLK3-226ENST00000569406 TMEM132CQ8N3T6 1108 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 SLC35F5Q8WV83 523 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 BRI3BPQ8WY22 251 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 FEM1AQ9BSK4 669 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 ADAM30Q9UKF2 790 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 FAM74A7A6NL05 159 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 PRKRAO75569 313 aaKnown RBP10.56□□□□□ -0.72
CLK3-226ENST00000569406 WDR47O94967 919 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 RLN2P04090 185 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 HDCP19113 662 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 RPL34P49207 117 aaKnown RBP10.56□□□□□ -0.72
CLK3-226ENST00000569406 YWHAHQ04917 246 aaPredicted RBP10.56□□□□□ -0.72
CLK3-226ENST00000569406 MAB21L1Q13394 359 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 IL18R1Q13478 541 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 RBMS2Q15434 407 aaKnown RBP10.56□□□□□ -0.72
CLK3-226ENST00000569406 FAM74A3Q4VXF1 159 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 RETREG3Q86VR2 466 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 NETO2Q8NC67 525 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 EDARADDQ8WWZ3 215 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 HYLS1Q96M11 299 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 KCNS3Q9BQ31 491 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 ADPGKQ9BRR6 497 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 LMAN2LQ9H0V9 348 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 MCUBQ9NWR8 336 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 SDHAF2Q9NX18 166 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 BABAM2Q9NXR7 383 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 CACNA2D2Q9NY47 1150 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 TSPAN16Q9UKR8 245 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 HES2Q9Y543 173 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 COL1A2P08123 1366 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 PDE4DIPQ5VU43 2346 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 A0A1W2PP18 115 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 A6NCN8 305 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 ASB14A6NK59 587 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 H3BRB1 525 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 KHNYNO15037 678 aaKnown RBP10.56□□□□□ -0.72
CLK3-226ENST00000569406 IGHA2P01877 340 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 MMP3P08254 477 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 NDUFB7P17568 137 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 SSTR2P30874 369 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 GLUD2P49448 558 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 CASP9P55211 416 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 ADARB1P78563 741 aaKnown RBP10.56□□□□□ -0.72
CLK3-226ENST00000569406 PRKCDQ05655 676 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 ANGPT1Q15389 498 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 USP45Q70EL2 814 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 GDPD1Q8N9F7 314 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 RDH11Q8TC12 318 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 CLEC4CQ8WTT0 213 aa10.56□□□□□ -0.72
CLK3-226ENST00000569406 C18orf25Q96B23 403 aaPredicted RBP10.56□□□□□ -0.72
CLK3-226ENST00000569406 MED18Q9BUE0 208 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms