RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 REPIN1Q9BWE0 567 aaKnown RBP15.36■□□□□ 0.05
CLK3-223ENST00000568488 KCNJ16Q9NPI9 418 aa15.36■□□□□ 0.05
CLK3-223ENST00000568488 DNAJB12Q9NXW2 375 aaKnown RBP15.36■□□□□ 0.05
CLK3-223ENST00000568488 IMPACTQ9P2X3 320 aa15.36■□□□□ 0.05
CLK3-223ENST00000568488 KCNN3Q9UGI6 736 aa15.36■□□□□ 0.05
CLK3-223ENST00000568488 LCMT1Q9UIC8 334 aa15.36■□□□□ 0.05
CLK3-223ENST00000568488 CDC14AQ9UNH5 594 aa15.36■□□□□ 0.05
CLK3-223ENST00000568488 RPH3AQ9Y2J0 694 aaPredicted RBP15.36■□□□□ 0.05
CLK3-223ENST00000568488 PRSS21Q9Y6M0 314 aa15.36■□□□□ 0.05
CLK3-223ENST00000568488 GTF3C1Q12789 2109 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 LOC105369274A0A096LPK9 316 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 LOC102723532A0A0G2JNH3 316 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 SLC5A10A0PJK1 596 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 FTH1P02794 183 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 H2AFZP0C0S5 128 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 ERVK-10P10266 1014 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 CD96P40200 585 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 ZNF140P52738 457 aaPredicted RBP15.35■□□□□ 0.05
CLK3-223ENST00000568488 FASTKQ14296 549 aaKnown RBP15.35■□□□□ 0.05
CLK3-223ENST00000568488 OR1C1Q15619 314 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 SKOR2Q2VWA4 1001 aaPredicted RBP15.35■□□□□ 0.05
CLK3-223ENST00000568488 ACER2Q5QJU3 275 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 MFSD7Q6UXD7 560 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 RANBP10Q6VN20 620 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 H2AFVQ71UI9 128 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 GALNTL5Q7Z4T8 443 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 VSIG1Q86XK7 387 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 SIAH3Q8IW03 269 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 OR4N4Q8N0Y3 316 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 FAM98AQ8NCA5 519 aaKnown RBP15.35■□□□□ 0.05
CLK3-223ENST00000568488 ASB5Q8WWX0 329 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 NANOS1Q8WY41 292 aaKnown RBP15.35■□□□□ 0.05
CLK3-223ENST00000568488 CTNNBL1Q8WYA6 563 aaPredicted RBP15.35■□□□□ 0.05
CLK3-223ENST00000568488 IMMP1LQ96LU5 166 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 FRMD6Q96NE9 622 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 UTP23Q9BRU9 249 aaKnown RBP15.35■□□□□ 0.05
CLK3-223ENST00000568488 LIME1Q9H400 295 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 DLL4Q9NR61 685 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 TRHDEQ9UKU6 1024 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 SLC39A10Q9ULF5 831 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 ASB1Q9Y576 335 aa15.35■□□□□ 0.05
CLK3-223ENST00000568488 VPS13CQ709C8 3753 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 LOC102723996A0A087X1L8 192 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 IGHV3-20A0A0C4DH32 117 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 TRBV5-4A0A0C4DH59 114 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 ASPDHA6ND91 283 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 TARM1B6A8C7 271 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 CST8O60676 142 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 ANXA9O76027 345 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 SEC24DO94855 1032 aaPredicted RBP15.34■□□□□ 0.05
CLK3-223ENST00000568488 OC90Q02509 493 aaPredicted RBP15.34■□□□□ 0.05
CLK3-223ENST00000568488 PLOD1Q02809 727 aaPredicted RBP15.34■□□□□ 0.05
CLK3-223ENST00000568488 STX1AQ16623 288 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 TAZQ16635 292 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 DBN1Q16643 649 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 BTBD16Q32M84 506 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 TMEM178AQ8NBL3 297 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 MDS2Q8NDY4 140 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 LILRB4Q8NHJ6 448 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 HAUS1Q96CS2 278 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 MMABQ96EY8 250 aaPredicted RBP15.34■□□□□ 0.05
CLK3-223ENST00000568488 DNAJC1Q96KC8 554 aaKnown RBP15.34■□□□□ 0.05
CLK3-223ENST00000568488 MDFIQ99750 246 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 KCNK13Q9HB14 408 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 ENAMQ9NRM1 1142 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 C14orf105Q9NVL8 296 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 ST6GALNAC2Q9UJ37 374 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 MKL2Q9ULH7 1088 aa15.34■□□□□ 0.05
CLK3-223ENST00000568488 QSOX1O00391 747 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 PRPF4O43172 522 aaKnown RBP eCLIP15.33■□□□□ 0.04
CLK3-223ENST00000568488 TOXO94900 526 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 TPOP07202 933 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 HOXD4P09016 255 aaPredicted RBP15.33■□□□□ 0.04
CLK3-223ENST00000568488 MSX1P28360 303 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 TFDP2Q14188 446 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 DNAJC21Q5F1R6 531 aaKnown RBP15.33■□□□□ 0.04
CLK3-223ENST00000568488 TMEM211Q6ICI0 200 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 TMEM205Q6UW68 189 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 FGD2Q7Z6J4 655 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 CHERPQ8IWX8 916 aaKnown RBP15.33■□□□□ 0.04
CLK3-223ENST00000568488 PIANPQ8IYJ0 282 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 OR2L8Q8NGY9 312 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 METTL21AQ8WXB1 218 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 P3H4Q92791 437 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 SCMH1Q96GD3 660 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 C10orf90Q96M02 699 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 MIPEPQ99797 713 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 SMR3AQ99954 134 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 MENTQ9BUN1 341 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 PACSIN1Q9BY11 444 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 RNF6Q9Y252 685 aa15.33■□□□□ 0.04
CLK3-223ENST00000568488 INTS1Q8N201 2190 aaKnown RBP15.33■□□□□ 0.04
CLK3-223ENST00000568488 NRP2O60462 931 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 ANXA5P08758 320 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 OR56A5P0C7T3 313 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 C8orf89P0DMQ9 161 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 ZNF24P17028 368 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 DNASE1P24855 282 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 CHRNB4P30926 498 aa15.32■□□□□ 0.04
CLK3-223ENST00000568488 ADRA1AP35348 466 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms