RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 FAM20AQ96MK3 541 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 ATF6BQ99941 703 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 SEPT11Q9NVA2 429 aaKnown RBP3.44□□□□□ -1.86
VPS13C-208ENST00000559119 WSB2Q9NYS7 404 aaPredicted RBP3.44□□□□□ -1.86
VPS13C-208ENST00000559119 STK26Q9P289 416 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 THAP10Q9P2Z0 257 aaPredicted RBP3.44□□□□□ -1.86
VPS13C-208ENST00000559119 LNPEPQ9UIQ6 1025 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 R4GN57 208 aa3.44□□□□□ -1.86
VPS13C-208ENST00000559119 ATRXP46100 2492 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-208ENST00000559119 MEIS2O14770 477 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 PHF1O43189 567 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-208ENST00000559119 TM4SF1P30408 202 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 GARSP41250 739 aaKnown RBP3.43□□□□□ -1.86
VPS13C-208ENST00000559119 DHODHQ02127 395 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 ZNF177Q13360 481 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-208ENST00000559119 TMEM132DQ14C87 1099 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 EXT1Q16394 746 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 UGT3A2Q3SY77 523 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 FAM182AQ5T1J6 154 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 BAIAP2L2Q6UXY1 529 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 MMS22LQ6ZRQ5 1243 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 RAPH1Q70E73 1250 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 OR4N5Q8IXE1 308 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 WNT5BQ9H1J7 359 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 EIF2B3Q9NR50 452 aaKnown RBP3.43□□□□□ -1.86
VPS13C-208ENST00000559119 TNFRSF19Q9NS68 423 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 DPP3Q9NY33 737 aa3.43□□□□□ -1.86
VPS13C-208ENST00000559119 ZNF256Q9Y2P7 627 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-208ENST00000559119 COL16A1Q07092 1604 aaPredicted RBP3.43□□□□□ -1.86
VPS13C-208ENST00000559119 IGLV4-3A0A075B6K6 122 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 A0A087WWV3 80 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 SLCO2B1O94956 709 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 TNFAIP3P21580 790 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 DRD3P35462 400 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 DNA2P51530 1060 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 PNLIPRP2P54317 469 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 MAT1AQ00266 395 aaKnown RBP3.42□□□□□ -1.86
VPS13C-208ENST00000559119 KLC1Q07866 573 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 SGCGQ13326 291 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 PTPN14Q15678 1187 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 TEX38Q6PEX7 206 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 ARHGAP22Q7Z5H3 698 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 TMPRSS11BQ86T26 416 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 LGI2Q8N0V4 545 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 TDRD5Q8NAT2 981 aaKnown RBP3.42□□□□□ -1.86
VPS13C-208ENST00000559119 OR7A2PQ8NGA2 310 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 MS4A10Q96PG2 267 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 CDRT15Q96T59 188 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 OLFM1Q99784 485 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 ADNPQ9H2P0 1102 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 MMP27Q9H306 513 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 Q9N2K0 584 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.42□□□□□ -1.86
VPS13C-208ENST00000559119 SELENOKQ9Y6D0 94 aa3.42□□□□□ -1.86
VPS13C-208ENST00000559119 B4DLN1 442 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 ARPC2O15144 300 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 PAPSS1O43252 624 aaPredicted RBP3.41□□□□□ -1.86
VPS13C-208ENST00000559119 SLC15A1P46059 708 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 MRPL12P52815 198 aaKnown RBP3.41□□□□□ -1.86
VPS13C-208ENST00000559119 LYZP61626 148 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 CAPRIN1Q14444 709 aaKnown RBP3.41□□□□□ -1.86
VPS13C-208ENST00000559119 RFTN1Q14699 578 aaPredicted RBP3.41□□□□□ -1.86
VPS13C-208ENST00000559119 PHKG1Q16816 387 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 RNASEH2BQ5TBB1 312 aaKnown RBP3.41□□□□□ -1.86
VPS13C-208ENST00000559119 MMD2Q8IY49 270 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 PARP8Q8N3A8 854 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 TTC39CQ8N584 583 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 PIGBQ92521 554 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 SERAC1Q96JX3 654 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 C2orf48Q96LS8 159 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 FAM218AQ96MZ4 157 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 SFXN2Q96NB2 322 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 UBAC1Q9BSL1 405 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 SLITRK2Q9H156 845 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 OSGEPL1Q9H4B0 414 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 PSD3Q9NYI0 1048 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 NYAP2Q9P242 653 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 TMED3Q9Y3Q3 217 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 KIF25-AS1Q9Y6Z4 181 aa3.41□□□□□ -1.86
VPS13C-208ENST00000559119 A0A087X0M5 115 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 A0A1B0GX30 115 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 TMEM221A6NGB7 291 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 K7EQD1 137 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 O00370 1275 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 ERAL1O75616 437 aaKnown RBP3.4□□□□□ -1.87
VPS13C-208ENST00000559119 KRT33AO76009 404 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 HAPLN1P10915 354 aaPredicted RBP3.4□□□□□ -1.87
VPS13C-208ENST00000559119 OR3A2P47893 321 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 IRF3Q14653 427 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 GARNL3Q5VVW2 1013 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 RNF130Q86XS8 419 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 THAP8Q8NA92 274 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 SYN2Q92777 582 aaPredicted RBP3.4□□□□□ -1.87
VPS13C-208ENST00000559119 ZIM3Q96PE6 472 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 OPA3Q9H6K4 179 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 TLE6Q9H808 572 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 ANAPC11Q9NYG5 84 aa3.4□□□□□ -1.87
VPS13C-208ENST00000559119 PTGES3LE9PB15 166 aa3.39□□□□□ -1.87
VPS13C-208ENST00000559119 NPIPB9F8W1W9 429 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms