RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 MED20Q9H944 212 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 SLC24A2Q9UI40 661 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 MAN1B1Q9UKM7 699 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 ABT1Q9ULW3 272 aaKnown RBP3.17□□□□□ -1.9
SCFD1-216ENST00000555550 GPR34Q9UPC5 381 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 R4GN57 208 aa3.17□□□□□ -1.9
SCFD1-216ENST00000555550 NEMP2A6NFY4 417 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 ASB14A6NK59 587 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 ARPC2O15144 300 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 TOMM70O94826 608 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 IGHV2-70P01814 119 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 VTNP04004 478 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 DANCRP0C864 163 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 RBMS1P29558 406 aaKnown RBP3.16□□□□□ -1.9
SCFD1-216ENST00000555550 HLA-FP30511 346 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 RIGQ13278 110 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 BAATQ14032 418 aaPredicted RBP3.16□□□□□ -1.9
SCFD1-216ENST00000555550 EFTUD2Q15029 972 aaKnown RBP eCLIP3.16□□□□□ -1.9
SCFD1-216ENST00000555550 MCMDC2Q4G0Z9 681 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 CES4AQ5XG92 561 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 NUP54Q7Z3B4 507 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 AQP11Q8NBQ7 271 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 CFAP61Q8NHU2 1237 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 GATAD1Q8WUU5 269 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 PRICKLE1Q96MT3 831 aaPredicted RBP3.16□□□□□ -1.9
SCFD1-216ENST00000555550 RAB11FIP5Q9BXF6 653 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 PRRG4Q9BZD6 226 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 MTMR12Q9C0I1 747 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 PDE7BQ9NP56 450 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 B3GAT2Q9NPZ5 323 aa3.16□□□□□ -1.9
SCFD1-216ENST00000555550 GLOD5A6NK44 160 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 SNURFLB1AK76 121 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 FPGTO14772 594 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 BEST1O76090 585 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 LINGO3P0C6S8 592 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 IRF2P14316 349 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 RPL35AP18077 110 aaKnown RBP3.15□□□□□ -1.91
SCFD1-216ENST00000555550 MPZP25189 248 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 ACTN2P35609 894 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 XGP55808 180 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 MYL7Q01449 175 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 C6orf163Q5TEZ5 329 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 NOTUMQ6P988 496 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 KIF6Q6ZMV9 814 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 CHMP1BQ7LBR1 199 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 ERC1Q8IUD2 1116 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 NDUFAF2Q8N183 169 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 FBXL16Q8N461 479 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 SLC37A3Q8NCC5 494 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 PRSS33Q8NF86 280 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 TSPAN14Q8NG11 270 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 OR4K1Q8NGD4 311 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 MIPOL1Q8TD10 442 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 AGAP4Q96P64 663 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 SPAG5Q96R06 1193 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 LPAR4Q99677 370 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 MXD3Q9BW11 206 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 TRIM6Q9C030 488 aaPredicted RBP3.15□□□□□ -1.91
SCFD1-216ENST00000555550 PRR34Q9NV39 138 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 GDE1Q9NZC3 331 aa3.15□□□□□ -1.91
SCFD1-216ENST00000555550 CRNNQ9UBG3 495 aaPredicted RBP3.15□□□□□ -1.91
SCFD1-216ENST00000555550 CHORDC1Q9UHD1 332 aaPredicted RBP3.15□□□□□ -1.91
SCFD1-216ENST00000555550 DDX25Q9UHL0 483 aaKnown RBP3.15□□□□□ -1.91
SCFD1-216ENST00000555550 CPSF3Q9UKF6 684 aaKnown RBP3.15□□□□□ -1.91
SCFD1-216ENST00000555550 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.15□□□□□ -1.91
SCFD1-216ENST00000555550 ZNF646O15015 1829 aaPredicted RBP3.14□□□□□ -1.91
SCFD1-216ENST00000555550 IGHV3OR16-10A0A075B7F0 116 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 MPTX1A8MV57 137 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 RTL8CO15255 209 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 SH3BP5O60239 455 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 HPRP00739 348 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 ABCB1P08183 1280 aaPredicted RBP3.14□□□□□ -1.91
SCFD1-216ENST00000555550 LIG4P49917 911 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 DNA2P51530 1060 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 CSNK2BP67870 215 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 PAX8Q06710 450 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 COX10Q12887 443 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 PEX6Q13608 980 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 CDH18Q13634 790 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 VEZF1Q14119 521 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 MTF1Q14872 753 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 Q8N377 158 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 METTL4Q8N3J2 472 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 TTC30BQ8N4P2 665 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 SYT2Q8N9I0 419 aaPredicted RBP3.14□□□□□ -1.91
SCFD1-216ENST00000555550 OR7A2PQ8NGA2 310 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 TEKT4Q8WW24 435 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 ATL1Q8WXF7 558 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 C4orf45Q96LM5 186 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 FOXN4Q96NZ1 517 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 GCNAQ96QF7 691 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 GAL3ST4Q96RP7 486 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 ABHD1Q96SE0 405 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 CCDC3Q9BQI4 270 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 CCDC106Q9BWC9 280 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 KLHL4Q9C0H6 718 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 ZMYND12Q9H0C1 365 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 TLE6Q9H808 572 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 MYNNQ9NPC7 610 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 NDE1Q9NXR1 346 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms