RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 CES3Q6UWW8 571 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 NEK10Q6ZWH5 1172 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 LMNTD2Q8IXW0 634 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 PRELID2Q8N945 189 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 OR2A1Q8NGT9 310 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 OR9A1PQ8NGU1 263 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 AGAP4Q96P64 663 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 SPSB2Q99619 263 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 CRB3Q9BUF7 120 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 ZNF552Q9H707 407 aaPredicted RBP12.55□□□□□ -0.4
RTN3-207ENST00000536011 ZNF304Q9HCX3 659 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 SLC6A20Q9NP91 592 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 KLHL42Q9P2K6 505 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 CTSFQ9UBX1 484 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 ZNF282Q9UDV7 671 aaPredicted RBP12.55□□□□□ -0.4
RTN3-207ENST00000536011 CRYL1Q9Y2S2 319 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 NUP210LQ5VU65 1888 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 A0A0J9YVX5 310 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 FAM237BA0A1B0GVD1 139 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 OR2A25A4D2G3 310 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 CTAGE9A4FU28 777 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 SDR42E2A6NKP2 422 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 CYSRT1A8MQ03 144 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 TCP11X1B4DZS4 312 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 GOLGA8KD6RF30 607 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 GOLGA8TH3BQL2 631 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 PCDH17O14917 1159 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 PSIP1O75475 530 aaKnown RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 USP1O94782 785 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 DDAH2O95865 285 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 EIF2S1P05198 315 aaKnown RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 ERGP11308 486 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 ENO3P13929 434 aaPredicted RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 FBLP22087 321 aaKnown RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 ELOAQ14241 798 aaKnown RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 ESPL1Q14674 2120 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 TRIP13Q15645 432 aaPredicted RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 KLHL38Q2WGJ6 581 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 PLEKHN1Q494U1 663 aaPredicted RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 CCSMST1Q4G0I0 132 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 PRR30Q53SZ7 412 aaPredicted RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 COX15Q7KZN9 410 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 LRRC8AQ8IWT6 810 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 GABPB2Q8TAK5 448 aaPredicted RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 CALML6Q8TD86 181 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 PPP4R1Q8TF05 950 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 RERGQ96A58 199 aaPredicted RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 MAGOHBQ96A72 148 aaKnown RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 ZNF669Q96BR6 464 aaPredicted RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 FAM136AQ96C01 138 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 MVB12AQ96EY5 273 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 PBKQ96KB5 322 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 CABS1Q96KC9 395 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 WDR77Q9BQA1 342 aaPredicted RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 DPH7Q9BTV6 452 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 ACAT2Q9BWD1 397 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 LHPPQ9H008 270 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 SOX17Q9H6I2 414 aaPredicted RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 EPS8L2Q9H6S3 715 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 MRPS30Q9NP92 439 aaKnown RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 AGPAT4Q9NRZ5 378 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 ZC3H7BQ9UGR2 993 aaKnown RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 TSR3Q9UJK0 312 aaKnown RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 JRKLQ9Y4A0 524 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 HS3ST3B1Q9Y662 390 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 COPG1Q9Y678 874 aaKnown RBP12.54□□□□□ -0.4
RTN3-207ENST00000536011 COMMD10Q9Y6G5 202 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 PCSK5Q92824 1860 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 SHANK1Q9Y566 2161 aa12.54□□□□□ -0.4
RTN3-207ENST00000536011 ANKRD12Q6UB98 2062 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 NBPF19A0A087WUL8 3843 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 TCRBV7S3A2A0A539 114 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 VSTM2BA6NLU5 285 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 ARHGEF33A8MVX0 844 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 TXNDC9O14530 226 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 SOCS6O14544 535 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 MAP2K7O14733 419 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 KRT14P02533 472 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 ACPPP15309 386 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 EZRP15311 586 aaKnown RBP12.53□□□□□ -0.4
RTN3-207ENST00000536011 OR1D4P47884 311 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 TERF1P54274 439 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 PNLIPRP1P54315 467 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 ABATP80404 500 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 TSTA3Q13630 321 aaPredicted RBP12.53□□□□□ -0.4
RTN3-207ENST00000536011 ACSBG2Q5FVE4 666 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 FRMPD2BQ6IN97 320 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 KIRREL2Q6UWL6 708 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 Q6ZS92 163 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 METTL27Q8N6F8 245 aaPredicted RBP12.53□□□□□ -0.4
RTN3-207ENST00000536011 FBXO15Q8NCQ5 510 aaPredicted RBP12.53□□□□□ -0.4
RTN3-207ENST00000536011 MCUQ8NE86 351 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 GRK7Q8WTQ7 553 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 KCNJ9Q92806 393 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 MIEF2Q96C03 454 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 SNRNP40Q96DI7 357 aaKnown RBP12.53□□□□□ -0.4
RTN3-207ENST00000536011 EBNA1BP2Q99848 306 aaKnown RBP12.53□□□□□ -0.4
RTN3-207ENST00000536011 PLCD4Q9BRC7 762 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 C14orf105Q9NVL8 296 aa12.53□□□□□ -0.4
RTN3-207ENST00000536011 PPP2R2CQ9Y2T4 447 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms