RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 TET1Q8NFU7 2136 aa3.29□□□□□ -1.88
USP48-215ENST00000534705 NLRC5Q86WI3 1866 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 KIF26BQ2KJY2 2108 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 LAMA2P24043 3122 aaKnown RBP3.28□□□□□ -1.88
USP48-215ENST00000534705 OR5K3A6NET4 321 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 PRR23AA6NEV1 266 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 EIF4E1BA6NMX2 242 aaKnown RBP3.28□□□□□ -1.88
USP48-215ENST00000534705 A8MZ25 164 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 ANKRD66B4E2M5 251 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 C19orf81C9J6K1 198 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 ATP2A1O14983 1001 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 AP5Z1O43299 807 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 SYNGR3O43761 229 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 SLC22A3O75751 556 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 ADCY5O95622 1261 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 GH2P01242 217 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 IVLP07476 585 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 ZFYP08048 801 aaPredicted RBP3.28□□□□□ -1.88
USP48-215ENST00000534705 PORP16435 677 aaPredicted RBP3.28□□□□□ -1.88
USP48-215ENST00000534705 ACADLP28330 430 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 TIMP3P35625 211 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 CDKN1AP38936 164 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 MAGEA8P43361 318 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 TNNT3P45378 269 aaPredicted RBP3.28□□□□□ -1.88
USP48-215ENST00000534705 NOVP48745 357 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 TAF6P49848 677 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 ZNF131P52739 623 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 TPM4P67936 248 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 PRPF4BQ13523 1007 aaKnown RBP3.28□□□□□ -1.88
USP48-215ENST00000534705 ACVR2BQ13705 512 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 RBM39Q14498 530 aaKnown RBP3.28□□□□□ -1.88
USP48-215ENST00000534705 RAB6CQ53S08 254 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 BMP2KLQ5H9B9 411 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 PDSS1Q5T2R2 415 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 WLSQ5T9L3 541 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 GPR139Q6DWJ6 353 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 OR7E24Q6IFN5 339 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 ZSCAN25Q6NSZ9 544 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 ZNF852Q6ZMS4 543 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 KCTD8Q6ZWB6 473 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 ZNF589Q86UQ0 364 aaPredicted RBP3.28□□□□□ -1.88
USP48-215ENST00000534705 PM20D2Q8IYS1 436 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 CIARTQ8N365 385 aaPredicted RBP3.28□□□□□ -1.88
USP48-215ENST00000534705 ARL6IP6Q8N6S5 226 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 CCDC26Q8TAB7 109 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 CCDC47Q96A33 483 aaKnown RBP3.28□□□□□ -1.88
USP48-215ENST00000534705 TBC1D31Q96DN5 1066 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 EGLN2Q96KS0 407 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 C1orf74Q96LT6 269 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 PGLYRP2Q96PD5 576 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 EDEM3Q9BZQ6 932 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 RAB6CQ9H0N0 254 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 RWDD1Q9H446 243 aaPredicted RBP3.28□□□□□ -1.88
USP48-215ENST00000534705 POLR1BQ9H9Y6 1135 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 FAM118AQ9NWS6 357 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 TAAR2Q9P1P5 351 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 COPG2Q9UBF2 871 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 MORF4L1Q9UBU8 362 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 ADD3Q9UEY8 706 aaKnown RBP3.28□□□□□ -1.88
USP48-215ENST00000534705 RASAL2Q9UJF2 1139 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 ARID2Q68CP9 1835 aa3.28□□□□□ -1.88
USP48-215ENST00000534705 MICAL3Q7RTP6 2002 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 MYH11P35749 1972 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 ZMYM6O95789 1325 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 A0A087WUV0 522 aaPredicted RBP3.27□□□□□ -1.89
USP48-215ENST00000534705 FAM237BA0A1B0GVD1 139 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 hCG_1807616A0A1W2PRN6 198 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 C1orf226A1L170 272 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 SYCE3A1L190 88 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 ERICH4A6NGS2 130 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 TMCO5BA8MYB1 307 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 KIF2AO00139 706 aaPredicted RBP3.27□□□□□ -1.89
USP48-215ENST00000534705 PSMA7O14818 248 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 SMAD9O15198 467 aaKnown RBP3.27□□□□□ -1.89
USP48-215ENST00000534705 EIF3DO15371 548 aaKnown RBP eCLIP3.27□□□□□ -1.89
USP48-215ENST00000534705 PTP4A3O75365 173 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 ICAM1P05362 532 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 HSPD1P10809 573 aaKnown RBP3.27□□□□□ -1.89
USP48-215ENST00000534705 SCG2P13521 617 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 STMN1P16949 149 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 TMEM11P17152 192 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 GM2AP17900 193 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 IL11P20809 199 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 ATP5DP30049 168 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 HOXA13P31271 388 aaPredicted RBP3.27□□□□□ -1.89
USP48-215ENST00000534705 NNMTP40261 264 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 MSH2P43246 934 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 CLCN3P51790 818 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 MLLT10P55197 1068 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 ISL1P61371 349 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 PRAMEP78395 509 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 RPL24P83731 157 aaKnown RBP3.27□□□□□ -1.89
USP48-215ENST00000534705 MC1RQ01726 317 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 EPS8Q12929 822 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 DMP1Q13316 513 aaPredicted RBP3.27□□□□□ -1.89
USP48-215ENST00000534705 CRYMQ14894 314 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 ALX1Q15699 326 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 NAB2Q15742 525 aa3.27□□□□□ -1.89
USP48-215ENST00000534705 PKN2Q16513 984 aaKnown RBP3.27□□□□□ -1.89
USP48-215ENST00000534705 SIRPB2Q5JXA9 342 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms