RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 SMARCAD1Q9H4L7 1026 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 PDZD7Q9H5P4 517 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 BICC1Q9H694 974 aaKnown RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 EVA1AQ9H8M9 152 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 UBTD1Q9HAC8 227 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 KIF9Q9HAQ2 790 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 SDF2L1Q9HCN8 221 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 PDE7BQ9NP56 450 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 SETD4Q9NVD3 440 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 TMEM161AQ9NX61 479 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 SUCLA2Q9P2R7 463 aaPredicted RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 NFKBIL1Q9UBC1 381 aaPredicted RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 STK39Q9UEW8 545 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 CHORDC1Q9UHD1 332 aaPredicted RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 PADI3Q9ULW8 664 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 FAM96BQ9Y3D0 163 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 SESN1Q9Y6P5 492 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 NAV1Q8NEY1 1877 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 NOTCH1P46531 2555 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 KLRF2D3W0D1 207 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 J3KR12 359 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 SEC14L5O43304 696 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 ADAM20O43506 726 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 KLK8O60259 260 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 LMX1BO60663 402 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 PMS2P2O95744 297 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 TUBBP07437 444 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 ZNF853P0CG23 659 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 SFTPCP11686 197 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 DGKAP23743 735 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 CCNE1P24864 410 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 SSTR2P30874 369 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 DYNLL1P63167 89 aaKnown RBP3.74□□□□□ -1.81
CD44-235ENST00000532339 GFPT1Q06210 699 aaPredicted RBP3.74□□□□□ -1.81
CD44-235ENST00000532339 SETMARQ53H47 684 aaPredicted RBP3.74□□□□□ -1.81
CD44-235ENST00000532339 FAM133BQ5BKY9 247 aaKnown RBP3.74□□□□□ -1.81
CD44-235ENST00000532339 KIAA0930Q6ICG6 404 aaPredicted RBP3.74□□□□□ -1.81
CD44-235ENST00000532339 JADE1Q6IE81 842 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 RPUSD3Q6P087 351 aaKnown RBP3.74□□□□□ -1.81
CD44-235ENST00000532339 LCTLQ6UWM7 567 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 GLDNQ6ZMI3 551 aaPredicted RBP3.74□□□□□ -1.81
CD44-235ENST00000532339 QSOX2Q6ZRP7 698 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 SHFQ7M4L6 423 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 KRT77Q7Z794 578 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 NOXA1Q86UR1 476 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 SCML4Q8N228 414 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 ZNF248Q8NDW4 579 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 SNAPC3Q92966 411 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 CD101Q93033 1021 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 ARHGEF26Q96DR7 871 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 PGAM5Q96HS1 289 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 RGS18Q9NS28 235 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 SMARCAL1Q9NZC9 954 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 FBXL17Q9UF56 701 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 CNOT8Q9UFF9 292 aaKnown RBP3.74□□□□□ -1.81
CD44-235ENST00000532339 MTMR6Q9Y217 621 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 AAR2Q9Y312 384 aaKnown RBP3.74□□□□□ -1.81
CD44-235ENST00000532339 KNTC1P50748 2209 aa3.74□□□□□ -1.81
CD44-235ENST00000532339 NUP205Q92621 2012 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 IGHV4OR15-8A0A075B7B6 117 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 hDV102S1A0JD36 115 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 NTN3O00634 580 aaPredicted RBP3.73□□□□□ -1.81
CD44-235ENST00000532339 SH2B2O14492 632 aaPredicted RBP3.73□□□□□ -1.81
CD44-235ENST00000532339 SCAMP1O15126 338 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 CIAO1O76071 339 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 NKX2-2O95096 273 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 CGAP01215 116 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 PCNAP12004 261 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 IL7RP16871 459 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 AGAP20933 346 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 DHPSP49366 369 aaPredicted RBP3.73□□□□□ -1.81
CD44-235ENST00000532339 METAP2P50579 478 aaKnown RBP eCLIP3.73□□□□□ -1.81
CD44-235ENST00000532339 POU5F1Q01860 360 aaKnown RBP3.73□□□□□ -1.81
CD44-235ENST00000532339 ARL16Q0P5N6 197 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 RUNX2Q13950 521 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 IGFBP7Q16270 282 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 MRGPRG-AS1Q2M3A8 158 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 HIST2H2BDQ6DRA6 164 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 CPLX2Q6PUV4 134 aaKnown RBP3.73□□□□□ -1.81
CD44-235ENST00000532339 CLEC17AQ6ZS10 378 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 GSTA5Q7RTV2 222 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 ERICH1Q86X53 443 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 LINC00346Q8IVM7 164 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 SLC35F3Q8IY50 421 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 GJC3Q8NFK1 279 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 ARRDC2Q8TBH0 407 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 SSC4DQ8WTU2 575 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 ELSPBP1Q96BH3 223 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 ELMOD3Q96FG2 381 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 CASD1Q96PB1 797 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 UHRF2Q96PU4 802 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 SEMA3CQ99985 751 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 MXRA8Q9BRK3 442 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 SRSF8Q9BRL6 282 aaKnown RBP3.73□□□□□ -1.81
CD44-235ENST00000532339 TRMT61BQ9BVS5 477 aaKnown RBP3.73□□□□□ -1.81
CD44-235ENST00000532339 C1QTNF5Q9BXJ0 243 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 AP1M1Q9BXS5 423 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 PLA2G2FQ9BZM2 168 aa3.73□□□□□ -1.81
CD44-235ENST00000532339 ZNF334Q9HCZ1 680 aaPredicted RBP3.73□□□□□ -1.81
CD44-235ENST00000532339 MRPL17Q9NRX2 175 aaKnown RBP3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms