RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.93□□□□□ -1.3
SDCBP-208ENST00000520228 IFNKQ9P0W0 207 aa6.93□□□□□ -1.3
SDCBP-208ENST00000520228 SLC12A6Q9UHW9 1150 aa6.93□□□□□ -1.3
SDCBP-208ENST00000520228 STOML2Q9UJZ1 356 aa6.93□□□□□ -1.3
SDCBP-208ENST00000520228 ZFHX2Q9C0A1 2572 aaPredicted RBP6.93□□□□□ -1.3
SDCBP-208ENST00000520228 SYNJ2BP-COX16A0A087WUM0 186 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 GOLGA6L7A0A1B0GV03 622 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 OR6C68A6NDL8 312 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 LRRC53A6NM62 1247 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 ACSL4O60488 711 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 DAB1O75553 588 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 PAPSS2O95340 614 aaPredicted RBP6.92□□□□□ -1.3
SDCBP-208ENST00000520228 MOCS2O96007 188 aaPredicted RBP6.92□□□□□ -1.3
SDCBP-208ENST00000520228 IGLV3-25P01717 112 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 CISD3P0C7P0 127 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 UNGP13051 313 aaPredicted RBP6.92□□□□□ -1.3
SDCBP-208ENST00000520228 TNFAIP3P21580 790 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 CCR1P32246 355 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 MATKP42679 507 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 PITX1P78337 314 aaPredicted RBP6.92□□□□□ -1.3
SDCBP-208ENST00000520228 NME3Q13232 169 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 SLC18A3Q16572 532 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 ALG10Q5BKT4 473 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 ALG10BQ5I7T1 473 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 INTS11Q5TA45 600 aaKnown RBP6.92□□□□□ -1.3
SDCBP-208ENST00000520228 RFWD3Q6PCD5 774 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 IGFN1Q86VF2 1251 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 BTN2A3PQ96KV6 586 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 ZNF778Q96MU6 729 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 TEFMQ96QE5 360 aaKnown RBP6.92□□□□□ -1.3
SDCBP-208ENST00000520228 C11orf70Q9BRQ4 267 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 SLC2A11Q9BYW1 496 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 TMEM51Q9NW97 253 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 C2orf42Q9NWW7 574 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 GRHL1Q9NZI5 618 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 AIPL1Q9NZN9 384 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 ADAM22Q9P0K1 906 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 COX16Q9P0S2 106 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 NLKQ9UBE8 527 aa6.92□□□□□ -1.3
SDCBP-208ENST00000520228 PIEZO1Q92508 2521 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 TARSL2A2RTX5 802 aaKnown RBP6.91□□□□□ -1.3
SDCBP-208ENST00000520228 TIMM44O43615 452 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 TBL1XO60907 577 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 KLF8O95600 359 aaPredicted RBP6.91□□□□□ -1.3
SDCBP-208ENST00000520228 F9P00740 461 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 CALB1P05937 261 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 TDGF1P13385 188 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 HOXA6P31267 233 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 PGM1P36871 562 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 NBL1P41271 181 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 PTPN9P43378 593 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 ZBED6P86452 979 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 KLHL30Q0D2K2 578 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 EIF4EBP2Q13542 120 aaPredicted RBP6.91□□□□□ -1.3
SDCBP-208ENST00000520228 DMC1Q14565 340 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 SLC25A52Q3SY17 297 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 SYTL3Q4VX76 610 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 FAM133BQ5BKY9 247 aaKnown RBP6.91□□□□□ -1.3
SDCBP-208ENST00000520228 MPP7Q5T2T1 576 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 PXDC1Q5TGL8 231 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 NADSYN1Q6IA69 706 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 ZNF425Q6IV72 752 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 ACAD10Q6JQN1 1059 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 ARCQ7LC44 396 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 TRMT11Q7Z4G4 463 aaKnown RBP6.91□□□□□ -1.3
SDCBP-208ENST00000520228 PHLDB2Q86SQ0 1253 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 TRIM74Q86UV6 250 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 TRIM73Q86UV7 250 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 PHF13Q86YI8 300 aaPredicted RBP6.91□□□□□ -1.3
SDCBP-208ENST00000520228 GPSM1Q86YR5 675 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 SLC25A41Q8N5S1 370 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 ALLCQ8N6M5 410 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 ARFGAP1Q8N6T3 406 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 ATP6V0D2Q8N8Y2 350 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 IL17RCQ8NAC3 791 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 KDM1BQ8NB78 822 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 HJURPQ8NCD3 748 aaPredicted RBP6.91□□□□□ -1.3
SDCBP-208ENST00000520228 RFWD2Q8NHY2 731 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 RAB40AQ8WXH6 277 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 SYN2Q92777 582 aaPredicted RBP6.91□□□□□ -1.3
SDCBP-208ENST00000520228 NT5C3BQ969T7 300 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 ELP4Q96EB1 424 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 NPY6RQ99463 290 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 CD180Q99467 661 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 FUZQ9BT04 418 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 XPO4Q9C0E2 1151 aaKnown RBP6.91□□□□□ -1.3
SDCBP-208ENST00000520228 HAUS4Q9H6D7 363 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 PNRC2Q9NPJ4 139 aaKnown RBP6.91□□□□□ -1.3
SDCBP-208ENST00000520228 SEMA4BQ9NPR2 832 aaPredicted RBP6.91□□□□□ -1.3
SDCBP-208ENST00000520228 XPO7Q9UIA9 1087 aaKnown RBP6.91□□□□□ -1.3
SDCBP-208ENST00000520228 CLEC4EQ9ULY5 219 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 STAP1Q9ULZ2 295 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.91□□□□□ -1.3
SDCBP-208ENST00000520228 R4GN57 208 aa6.91□□□□□ -1.3
SDCBP-208ENST00000520228 TYW5A2RUC4 315 aaKnown RBP6.9□□□□□ -1.3
SDCBP-208ENST00000520228 ANTXRLA6NF34 631 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 PROB1E7EW31 1015 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 F5H5T6 163 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 SGK1O00141 431 aa6.9□□□□□ -1.3
SDCBP-208ENST00000520228 APBB3O95704 486 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms