RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 IQCCQ4KMZ1 466 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 CRB2Q5IJ48 1285 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 ADGRG6Q86SQ4 1221 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 IFNLR1Q8IU57 520 aaPredicted RBP12.36□□□□□ -0.43
USP53-209ENST00000514665 ZBED6CLQ96FA7 236 aaPredicted RBP12.36□□□□□ -0.43
USP53-209ENST00000514665 SLC35G5Q96KT7 338 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 HTATIP2Q9BUP3 242 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 EFCAB11Q9BUY7 163 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 NLE1Q9NVX2 485 aaPredicted RBP12.36□□□□□ -0.43
USP53-209ENST00000514665 COMMD3Q9UBI1 195 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 PMF1-BGLAPU3KQ54 211 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 G3V2L1 256 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 GMFGO60234 142 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 RASGRP1O95267 797 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 CCNDBP1O95273 360 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 VIPP01282 170 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 ACP5P13686 325 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 SCN1BQ07699 218 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 SCAPQ12770 1279 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 CLEC12AQ5QGZ9 265 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 RBM48Q5RL73 367 aaKnown RBP12.35□□□□□ -0.43
USP53-209ENST00000514665 DNAJB8Q8NHS0 232 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 MRM3Q9HC36 420 aaKnown RBP12.35□□□□□ -0.43
USP53-209ENST00000514665 MRPS33Q9Y291 106 aaKnown RBP12.35□□□□□ -0.43
USP53-209ENST00000514665 PFKMP08237 780 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 ATP1B2P14415 290 aaPredicted RBP12.35□□□□□ -0.43
USP53-209ENST00000514665 GCAP28676 217 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 SH3BP2P78314 561 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 PRR5P85299 388 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 LGALS3BPQ08380 585 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 MYLK3Q32MK0 819 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 KCT2Q8NC54 265 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 DMRTB1Q96MA1 342 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 ITGB1BP2Q9UKP3 347 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 IRS2Q9Y4H2 1338 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 TRBC2A0A5B9 178 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 EBLN1P0CF75 366 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 KELP23276 732 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 GLDCP23378 1020 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 RPL10P27635 214 aaKnown RBP12.35□□□□□ -0.43
USP53-209ENST00000514665 HNMTP50135 292 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 CLCN4P51793 760 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 PSMD4P55036 377 aaKnown RBP12.35□□□□□ -0.43
USP53-209ENST00000514665 SNAP47Q5SQN1 464 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 SUSD1Q6UWL2 747 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 TRIM74Q86UV6 250 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 LRRTM3Q86VH5 581 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 THOC6Q86W42 341 aaKnown RBP12.35□□□□□ -0.43
USP53-209ENST00000514665 NXPE1Q8N323 547 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 ZUFSPQ96AP4 578 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 PYURFQ96I23 114 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 HSH2DQ96JZ2 352 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 C1orf74Q96LT6 269 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 CITED4Q96RK1 184 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 YTHDF1Q9BYJ9 559 aaKnown RBP12.35□□□□□ -0.43
USP53-209ENST00000514665 ING3Q9NXR8 418 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 ZNF221Q9UK13 617 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 DHRS7Q9Y394 339 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 SPIN1Q9Y657 262 aaPredicted RBP12.35□□□□□ -0.43
USP53-209ENST00000514665 WNT6Q9Y6F9 365 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 FAM92AA1XBS5 289 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 COCHO43405 550 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 POP7O75817 140 aaKnown RBP12.35□□□□□ -0.43
USP53-209ENST00000514665 KLHL18O94889 574 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 IFNGP01579 166 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 GM2AP17900 193 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 AVPR1BP47901 424 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 CDK6Q00534 326 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 RANBP10Q6VN20 620 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 MBOAT1Q6ZNC8 495 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 FAM92BQ6ZTR7 304 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 BEND5Q7L4P6 421 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 MMAAQ8IVH4 418 aaKnown RBP12.35□□□□□ -0.43
USP53-209ENST00000514665 KRTCAP2Q8N6L1 136 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 DCAF4L2Q8NA75 395 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 SLAIN1Q8ND83 568 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 ARNTL2Q8WYA1 636 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 ZNF347Q96SE7 839 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 CD244Q9BZW8 370 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 TMEM27Q9HBJ8 222 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 THUMPD1Q9NXG2 353 aaKnown RBP12.35□□□□□ -0.43
USP53-209ENST00000514665 ADAMTS5Q9UNA0 930 aa12.35□□□□□ -0.43
USP53-209ENST00000514665 DHFRP00374 187 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 APODP05090 189 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 TFPTP0C1Z6 253 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 PNLIPRP1P54315 467 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 OR4D2P58180 307 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 DUOXA1Q1HG43 343 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 VITQ6UXI7 678 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 SERINC5Q86VE9 423 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 ZNF382Q96SR6 550 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 KCNK13Q9HB14 408 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 CCM2LQ9NUG4 571 aaPredicted RBP12.34□□□□□ -0.43
USP53-209ENST00000514665 GIN1Q9NXP7 522 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 PHLPP1O60346 1717 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 PRSS51A0A1B0GVH4 220 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 SLC22A1O15245 554 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 GRID2O43424 1007 aa12.34□□□□□ -0.43
USP53-209ENST00000514665 JUNP05412 331 aaKnown RBP12.34□□□□□ -0.43
USP53-209ENST00000514665 PABPC4LP0CB38 370 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms