RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ODF4Q2M2E3 257 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 LRRC38Q5VT99 294 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 PRAMEF8Q5VWM4 474 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 LYSMD4Q5XG99 296 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 KCTD11Q693B1 232 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 ETFRF1Q6IPR1 90 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 TMEM139Q8IV31 216 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 AQP12AQ8IXF9 295 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 TEX9Q8N6V9 391 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 OR11H4Q8NGC9 324 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 ST7LQ8TDW4 575 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 GRHL3Q8TE85 626 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 PIGBQ92521 554 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 ADGRG7Q96K78 797 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 RASL10BQ96S79 203 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 PKP4Q99569 1192 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 NTPCRQ9BSD7 190 aaKnown RBP4.78□□□□□ -1.64
UPF3B-203ENST00000478840 P2RY12Q9H244 342 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 P4HTMQ9NXG6 502 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 MAD2L2Q9UI95 211 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 ZDHHC2Q9UIJ5 367 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 CHKBQ9Y259 395 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 HBS1LQ9Y450 684 aaKnown RBP4.78□□□□□ -1.64
UPF3B-203ENST00000478840 ASPDHA6ND91 283 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 C5orf51A6NDU8 294 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 CCDC69A6NI79 296 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 HNRNPCL2B2RXH8 293 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 CACNB4O00305 520 aaPredicted RBP4.77□□□□□ -1.65
UPF3B-203ENST00000478840 ATP9AO75110 1047 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 CRCPO75575 148 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 PCP11498 1178 aaKnown RBP4.77□□□□□ -1.65
UPF3B-203ENST00000478840 KRT3P12035 628 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 GP1BBP13224 206 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 CYP2A7P20853 494 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 MAPK3P27361 379 aaPredicted RBP4.77□□□□□ -1.65
UPF3B-203ENST00000478840 ZNF81P51508 661 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 FUT6P51993 359 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 MBTD1Q05BQ5 628 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 RBBP7Q16576 425 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 PHLDA2Q53GA4 152 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 OR4A47Q6IF82 309 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 ZNF770Q6IQ21 691 aaPredicted RBP4.77□□□□□ -1.65
UPF3B-203ENST00000478840 ZNF549Q6P9A3 640 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 CATSPER4Q7RTX7 472 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 ZNF554Q86TJ5 538 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 PLD3Q8IV08 490 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 FBXL14Q8N1E6 418 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 HDDC3Q8N4P3 179 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 IQCF1Q8N6M8 205 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 MRPL43Q8N983 215 aaKnown RBP4.77□□□□□ -1.65
UPF3B-203ENST00000478840 NOA1Q8NC60 698 aaKnown RBP4.77□□□□□ -1.65
UPF3B-203ENST00000478840 OR10Q1Q8NGQ4 319 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 LILRB1Q8NHL6 650 aaPredicted RBP4.77□□□□□ -1.65
UPF3B-203ENST00000478840 RNASE8Q8TDE3 154 aaKnown RBP4.77□□□□□ -1.65
UPF3B-203ENST00000478840 HSD17B8Q92506 261 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 PYCR2Q96C36 320 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 AP2M1Q96CW1 435 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 TBC1D31Q96DN5 1066 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 PGM2Q96G03 612 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 CDKN2AIPNLQ96HQ2 116 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 EPSTI1Q96J88 318 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 ZNF48Q96MX3 618 aaPredicted RBP4.77□□□□□ -1.65
UPF3B-203ENST00000478840 MAP3K3Q99759 626 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 RTP3Q9BQQ7 232 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 LRRC1Q9BTT6 524 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 PANK2Q9BZ23 570 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 ZMYND12Q9H0C1 365 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 S1PR5Q9H228 398 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 UBQLN3Q9H347 655 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 TLE6Q9H808 572 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 GPR173Q9NS66 373 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 PKD2L2Q9NZM6 624 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 FETUBQ9UGM5 382 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 POU2F3Q9UKI9 436 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 ITM2BQ9Y287 266 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 EVPLQ92817 2033 aa4.77□□□□□ -1.65
UPF3B-203ENST00000478840 DHX29Q7Z478 1369 aaKnown RBP4.77□□□□□ -1.65
UPF3B-203ENST00000478840 ZNF521Q96K83 1311 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 IGHV4OR15-8A0A075B7B6 117 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 RNF103-CHMP3A0A140T963 221 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 C2CD4DB7Z1M9 353 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 PRSS46E5RG02 174 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 RNF103O00237 685 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 PRPSAP2O60256 369 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 CTSVO60911 334 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 LETM1O95202 739 aaPredicted RBP4.76□□□□□ -1.65
UPF3B-203ENST00000478840 IGHV4-39P01824 125 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 NR2C2P49116 596 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 CASP9P55211 416 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 AKAP17AQ02040 695 aaKnown RBP4.76□□□□□ -1.65
UPF3B-203ENST00000478840 IL10RBQ08334 325 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 SF3B4Q15427 424 aaKnown RBP eCLIP4.76□□□□□ -1.65
UPF3B-203ENST00000478840 STXBP2Q15833 593 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 TOR1AIP1Q5JTV8 583 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 FAM46CQ5VWP2 391 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 CORO6Q6QEF8 472 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 C9orf47Q6ZRZ4 202 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 SLC9B2Q86UD5 537 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 ZNF410Q86VK4 478 aa4.76□□□□□ -1.65
UPF3B-203ENST00000478840 LGI2Q8N0V4 545 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms