RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SYNPO2LQ9H987 977 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 ZBTB20Q9HC78 741 aaPredicted RBP17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 INTS10Q9NVR2 710 aaKnown RBP17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 CDC23Q9UJX2 597 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 FBXL4Q9UKA2 621 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 B3GNT3Q9Y2A9 372 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 MED16Q9Y2X0 877 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 NEU2Q9Y3R4 380 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 HS3ST3B1Q9Y662 390 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 FAM169AQ9Y6X4 670 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 NOTCH2Q04721 2471 aa17.97■□□□□ 0.47
CCDC88B-206ENST00000473405 IGKV1-8A0A0C4DH67 115 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 A0A0J9YVX5 310 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 ZCWPW2A0A1B0GU75 182 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 FAM237BA0A1B0GVD1 139 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 VSTM2BA6NLU5 285 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 PFDN6O15212 129 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 SRPX2O60687 465 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 MLNP12872 115 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 PKMP14618 531 aaKnown RBP17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 PAMP19021 973 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 CHRM3P20309 590 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 SARNPP82979 210 aaKnown RBP17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 KLHL38Q2WGJ6 581 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 ANKRD20A4Q4UJ75 823 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 OR9A1PQ8NGU1 263 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 INPP5DQ92835 1189 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 ZNF669Q96BR6 464 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 C19orf60Q96EN9 201 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 C10orf90Q96M02 699 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 SERPINB12Q96P63 405 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 MESP1Q9BRJ9 268 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 ACAT2Q9BWD1 397 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 SOX17Q9H6I2 414 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 ATP13A2Q9NQ11 1180 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 SAMD15Q9P1V8 674 aa17.96■□□□□ 0.47
CCDC88B-206ENST00000473405 HYKKA2RU49 373 aa17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 PIM1P11309 404 aaPredicted RBP17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 MAGEA3P43357 314 aa17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 AIMP2Q13155 320 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 MRPL49Q13405 166 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 DHX34Q14147 1143 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 CYP1B1Q16678 543 aa17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 FAM214AQ32MH5 1076 aa17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 ZNF549Q6P9A3 640 aa17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 SUSD1Q6UWL2 747 aa17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 KIRREL2Q6UWL6 708 aa17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 DENND6AQ8IWF6 608 aa17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 MAGOHBQ96A72 148 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 SNRNP40Q96DI7 357 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 ZFYVE21Q9BQ24 234 aa17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 DPH7Q9BTV6 452 aa17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 XAB2Q9HCS7 855 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 NXT1Q9UKK6 140 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 VPS9D1Q9Y2B5 631 aa17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 MAU2Q9Y6X3 613 aa17.95■□□□□ 0.46
CCDC88B-206ENST00000473405 E5RI56 91 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 GOLGA8MH3BSY2 632 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 SEMA7AO75326 666 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 USP1O94782 785 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 IPO13O94829 963 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 RNF224P0DH78 156 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 CMPK1P30085 196 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 CTBP1Q13363 440 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 CUL1Q13616 776 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 PRTGQ2VWP7 1150 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 CRB2Q5IJ48 1285 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 FHL5Q5TD97 284 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 PRAMEF13Q5VWM6 474 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 REXO1L1PQ8IX06 675 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 IQCKQ8N0W5 287 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 MCUQ8NE86 351 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 SMPDL3AQ92484 453 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 PKP4Q99569 1192 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 FBXO6Q9NRD1 293 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 FAM114A2Q9NRY5 505 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 STOX2Q9P2F5 926 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 ZC3H7BQ9UGR2 993 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 JRKLQ9Y4A0 524 aa17.94■□□□□ 0.46
CCDC88B-206ENST00000473405 SDR42E2A6NKP2 422 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 KIF5CO60282 957 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 AGFG2O95081 481 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 SLC16A8O95907 504 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 CATP04040 527 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 ITGA3P26006 1051 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 COILP38432 576 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 SLC1A2P43004 574 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 ARHGAP19Q14CB8 494 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 NAA25Q14CX7 972 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 FBXO42Q6P3S6 717 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 CCDC137Q6PK04 289 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 NEK10Q6ZWH5 1172 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 PAQR7Q86WK9 346 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 OR11G2Q8NGC1 345 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 ZNF480Q8WV37 535 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 KCNJ9Q92806 393 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 PBKQ96KB5 322 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 PLCD4Q9BRC7 762 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 ZNF304Q9HCX3 659 aa17.93■□□□□ 0.46
CCDC88B-206ENST00000473405 SEMA3GQ9NS98 782 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms