RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PSIP1O75475 530 aaKnown RBP15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 MLNP12872 115 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 CMPK1P30085 196 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 OR1D4P47884 311 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 FASTKQ14296 549 aaKnown RBP15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 ESPL1Q14674 2120 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 ANKRD20A4Q4UJ75 823 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 ACSBG2Q5FVE4 666 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 EEF1AKMT2Q5JPI9 291 aaKnown RBP15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 PRAMEF13Q5VWM6 474 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 TTC27Q6P3X3 843 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 CASC4Q6P4E1 433 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 RASGEF1CQ8N431 466 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 ZADH2Q8N4Q0 377 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 METTL27Q8N6F8 245 aaPredicted RBP15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 ZFYVE21Q9BQ24 234 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 SOX17Q9H6I2 414 aaPredicted RBP15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 SEMA3GQ9NS98 782 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 SAMD15Q9P1V8 674 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 ZC3H7BQ9UGR2 993 aaKnown RBP15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 HS3ST3B1Q9Y662 390 aa15.84■□□□□ 0.13
CCDC28B-204ENST00000469003 CENPEQ02224 2701 aa15.83■□□□□ 0.13
CCDC28B-204ENST00000469003 LOC105369274A0A096LPK9 316 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 LOC102723532A0A0G2JNH3 316 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 MAGEB16A2A368 324 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 MYO1CO00159 1063 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 NRP2O60462 931 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 MED26O95402 600 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 CATP04040 527 aaKnown RBP15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 ITGA3P26006 1051 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 DHX34Q14147 1143 aaKnown RBP15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 ARHGAP19Q14CB8 494 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 KLHL38Q2WGJ6 581 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 PRMT9Q6P2P2 845 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 KIRREL2Q6UWL6 708 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 NEK10Q6ZWH5 1172 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 OR4N4Q8N0Y3 316 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 DTWD1Q8N5C7 304 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 MCUQ8NE86 351 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 SMPDL3AQ92484 453 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 MAGOHBQ96A72 148 aaKnown RBP15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 ZNF669Q96BR6 464 aaPredicted RBP15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 SNRNP40Q96DI7 357 aaKnown RBP15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 C19orf60Q96EN9 201 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 VPS50Q96JG6 964 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 TRIM56Q9BRZ2 755 aaKnown RBP15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 DPH7Q9BTV6 452 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 ACAT2Q9BWD1 397 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 ILKAPQ9H0C8 392 aaPredicted RBP15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 XAB2Q9HCS7 855 aaKnown RBP15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 ZNF304Q9HCX3 659 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 FAM114A2Q9NRY5 505 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 KLHL42Q9P2K6 505 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 MAU2Q9Y6X3 613 aa15.83■□□□□ 0.12
CCDC28B-204ENST00000469003 DOCK10Q96BY6 2186 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 SDR42E2A6NKP2 422 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 NRDCO43847 1150 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 PHF2O75151 1096 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 USP1O94782 785 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 EIF2S1P05198 315 aaKnown RBP15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 ERVK-10P10266 1014 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 RPA3P35244 121 aaPredicted RBP15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 HSD17B2P37059 387 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 CLCN7P51798 805 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 EMP3P54852 163 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 YBX1P67809 324 aaKnown RBP15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 MRPL49Q13405 166 aaKnown RBP15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 THOC5Q13769 683 aaKnown RBP15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 RBBP7Q16576 425 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 MUM1Q2TAK8 710 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 TTLL9Q3SXZ7 439 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 TUBB8Q3ZCM7 444 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 ZNF470Q6ECI4 717 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 FBXO42Q6P3S6 717 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 SUSD1Q6UWL2 747 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 Q6ZS92 163 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 SHISA6Q6ZSJ9 500 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 CISD2Q8N5K1 135 aaKnown RBP15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 SSC4DQ8WTU2 575 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 PBKQ96KB5 322 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 PLCD4Q9BRC7 762 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 ZBTB20Q9HC78 741 aaPredicted RBP15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 MRPS30Q9NP92 439 aaKnown RBP15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 ASF1BQ9NVP2 202 aa15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 CUEDC1Q9NWM3 386 aaPredicted RBP15.82■□□□□ 0.12
CCDC28B-204ENST00000469003 ITPR2Q14571 2701 aa15.81■□□□□ 0.12
CCDC28B-204ENST00000469003 ZCWPW2A0A1B0GU75 182 aa15.81■□□□□ 0.12
CCDC28B-204ENST00000469003 CTAGE9A4FU28 777 aa15.81■□□□□ 0.12
CCDC28B-204ENST00000469003 ENO4A6NNW6 628 aa15.81■□□□□ 0.12
CCDC28B-204ENST00000469003 ZNF839A8K0R7 811 aa15.81■□□□□ 0.12
CCDC28B-204ENST00000469003 H0YGG7 62 aa15.81■□□□□ 0.12
CCDC28B-204ENST00000469003 SEMA7AO75326 666 aa15.81■□□□□ 0.12
CCDC28B-204ENST00000469003 ALOX12BO75342 701 aa15.81■□□□□ 0.12
CCDC28B-204ENST00000469003 COILP38432 576 aaPredicted RBP15.81■□□□□ 0.12
CCDC28B-204ENST00000469003 CARSP49589 748 aaKnown RBP15.81■□□□□ 0.12
CCDC28B-204ENST00000469003 PNLIPRP1P54315 467 aa15.81■□□□□ 0.12
CCDC28B-204ENST00000469003 ARF3P61204 181 aaPredicted RBP15.81■□□□□ 0.12
CCDC28B-204ENST00000469003 OCA2Q04671 838 aa15.81■□□□□ 0.12
CCDC28B-204ENST00000469003 CYP1B1Q16678 543 aa15.81■□□□□ 0.12
CCDC28B-204ENST00000469003 EIF2S3LQ2VIR3 472 aaKnown RBP15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms