RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 HYKKA2RU49 373 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 PEX12O00623 359 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 ALBP02768 609 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 LONRF1Q17RB8 773 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 JMJD6Q6NYC1 403 aaPredicted RBP19.84■□□□□ 0.77
SDC1-205ENST00000447124 NEK10Q6ZWH5 1172 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 RNF44Q7L0R7 432 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 PPIL6Q8IXY8 311 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 ASB11Q8WXH4 323 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 SMPDL3AQ92484 453 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 FKBP10Q96AY3 582 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 FER1L6-AS2Q96M78 137 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 SPSB2Q99619 263 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 SLC26A1Q9H2B4 701 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 ZNF552Q9H707 407 aaPredicted RBP19.84■□□□□ 0.77
SDC1-205ENST00000447124 LUZP4Q9P127 313 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 MAP4K5Q9Y4K4 846 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 MAU2Q9Y6X3 613 aa19.84■□□□□ 0.77
SDC1-205ENST00000447124 PRRC2CQ9Y520 2896 aaKnown RBP19.83■□□□□ 0.77
SDC1-205ENST00000447124 GFYI3L273 518 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 DPM1O60762 260 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 CMPK1P30085 196 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 SOX8P57073 446 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 TIAL1Q01085 375 aaKnown RBP eCLIP19.83■□□□□ 0.77
SDC1-205ENST00000447124 ARHGAP19Q14CB8 494 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 FAM214AQ32MH5 1076 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 HSP90AA5PQ58FG0 334 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 SHISA6Q6ZSJ9 500 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 PAQR7Q86WK9 346 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 LRRC56Q8IYG6 542 aaPredicted RBP19.83■□□□□ 0.77
SDC1-205ENST00000447124 GALNT16Q8N428 558 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 TTC29Q8NA56 475 aaPredicted RBP19.83■□□□□ 0.77
SDC1-205ENST00000447124 PPFIBP2Q8ND30 876 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 CPT1CQ8TCG5 803 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 GRK7Q8WTQ7 553 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 ZNF480Q8WV37 535 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 INPP5DQ92835 1189 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 GPR21Q99679 349 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 PLCD4Q9BRC7 762 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 IARS2Q9NSE4 1012 aaKnown RBP19.83■□□□□ 0.77
SDC1-205ENST00000447124 CTSFQ9UBX1 484 aa19.83■□□□□ 0.77
SDC1-205ENST00000447124 CNTRLQ7Z7A1 2325 aa19.83■□□□□ 0.76
SDC1-205ENST00000447124 HEATR5BQ9P2D3 2071 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 USP9XQ93008 2570 aaPredicted RBP19.82■□□□□ 0.76
SDC1-205ENST00000447124 VSTM2BA6NLU5 285 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 E7ENX8 843 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 H0YGG7 62 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 CES2O00748 559 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 SOCS6O14544 535 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 ZSCAN12O43309 604 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 BANF1O75531 89 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 CATP04040 527 aaKnown RBP19.82■□□□□ 0.76
SDC1-205ENST00000447124 EIF2S1P05198 315 aaKnown RBP19.82■□□□□ 0.76
SDC1-205ENST00000447124 MPC1LP0DKB6 136 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 PIM1P11309 404 aaPredicted RBP19.82■□□□□ 0.76
SDC1-205ENST00000447124 MMP11P24347 488 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 GABRB3P28472 473 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 UQCRFS1P47985 274 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 PNLIPRP1P54315 467 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 ARF3P61204 181 aaPredicted RBP19.82■□□□□ 0.76
SDC1-205ENST00000447124 TAP2Q03519 686 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 PRTGQ2VWP7 1150 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 PLEKHN1Q494U1 663 aaPredicted RBP19.82■□□□□ 0.76
SDC1-205ENST00000447124 MSS51Q4VC12 460 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 PRR30Q53SZ7 412 aaPredicted RBP19.82■□□□□ 0.76
SDC1-205ENST00000447124 LMNTD2Q8IXW0 634 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 FBXO15Q8NCQ5 510 aaPredicted RBP19.82■□□□□ 0.76
SDC1-205ENST00000447124 CD200R1Q8TD46 325 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 KCNJ9Q92806 393 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 AARSD1Q9BTE6 412 aaKnown RBP19.82■□□□□ 0.76
SDC1-205ENST00000447124 DDX47Q9H0S4 455 aaKnown RBP19.82■□□□□ 0.76
SDC1-205ENST00000447124 SOX17Q9H6I2 414 aaPredicted RBP19.82■□□□□ 0.76
SDC1-205ENST00000447124 WDR54Q9H977 334 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 MRPS30Q9NP92 439 aaKnown RBP19.82■□□□□ 0.76
SDC1-205ENST00000447124 FAM114A2Q9NRY5 505 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 C5AR2Q9P296 337 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 SHANK1Q9Y566 2161 aa19.82■□□□□ 0.76
SDC1-205ENST00000447124 AGPSO00116 658 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 DNALI1O14645 258 aaPredicted RBP19.81■□□□□ 0.76
SDC1-205ENST00000447124 SLC16A8O95907 504 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 IVDP26440 423 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 RPA3P35244 121 aaPredicted RBP19.81■□□□□ 0.76
SDC1-205ENST00000447124 PRDX1Q06830 199 aaKnown RBP19.81■□□□□ 0.76
SDC1-205ENST00000447124 DHX9Q08211 1270 aaKnown RBP19.81■□□□□ 0.76
SDC1-205ENST00000447124 TSTA3Q13630 321 aaPredicted RBP19.81■□□□□ 0.76
SDC1-205ENST00000447124 MYBPC3Q14896 1274 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 PPP1R7Q15435 360 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 INPP5JQ15735 1006 aaPredicted RBP19.81■□□□□ 0.76
SDC1-205ENST00000447124 TTLL9Q3SXZ7 439 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 VWA5B1Q5TIE3 1220 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 SLC6A19Q695T7 634 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 ZNF425Q6IV72 752 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 KIRREL2Q6UWL6 708 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 ATCAYQ86WG3 371 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 IGDCC3Q8IVU1 814 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 CPNE9Q8IYJ1 553 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.81■□□□□ 0.76
SDC1-205ENST00000447124 C10orf90Q96M02 699 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 ZFYVE21Q9BQ24 234 aa19.81■□□□□ 0.76
SDC1-205ENST00000447124 MESP1Q9BRJ9 268 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms