RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 L3HYPDHQ96EM0 354 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 OR4K3Q96R72 315 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 PAIP2Q9BPZ3 127 aaKnown RBP15.22■□□□□ 0.03
USP40-206ENST00000443711 NUDT22Q9BRQ3 303 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 C1QTNF3Q9BXJ4 246 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 C1GALT1Q9NS00 363 aa15.22■□□□□ 0.03
USP40-206ENST00000443711 CNOT1A5YKK6 2376 aaKnown RBP15.22■□□□□ 0.03
USP40-206ENST00000443711 HEATR5BQ9P2D3 2071 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 A0A0J9YY10 115 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 TLCD2A6NGC4 264 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 LRRC14BA6NHZ5 514 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 D6RAR5 112 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 CASC3O15234 703 aaKnown RBP15.21■□□□□ 0.03
USP40-206ENST00000443711 KCNK5O95279 499 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 FTH1P19P0C7X4 201 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 HOXB3P14651 431 aaPredicted RBP15.21■□□□□ 0.03
USP40-206ENST00000443711 EPB42P16452 691 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 HRH2P25021 359 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 GFERP55789 205 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 PPP1CAP62136 330 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 CDC16Q13042 620 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 NAA25Q14CX7 972 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 PDK4Q16654 411 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 UNC50Q53HI1 259 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 ZNF678Q5SXM1 525 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 CACHD1Q5VU97 1274 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 FAM92BQ6ZTR7 304 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 TRIM73Q86UV7 250 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 CCNYL1Q8N7R7 359 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 OR2L3Q8NG85 312 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 MGARPQ8TDB4 240 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 MAP3K3Q99759 626 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 SEMA6CQ9H3T2 930 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 MRPS30Q9NP92 439 aaKnown RBP15.21■□□□□ 0.03
USP40-206ENST00000443711 GPRC5BQ9NZH0 403 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 PDP2Q9P2J9 529 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 KLHL3Q9UH77 587 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 PCTPQ9UKL6 214 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 ASB1Q9Y576 335 aa15.21■□□□□ 0.03
USP40-206ENST00000443711 H3BQF6 201 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 E2F3O00716 465 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 GIPC1O14908 333 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 CLGNO14967 610 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 TOX3O15405 576 aaPredicted RBP15.2■□□□□ 0.02
USP40-206ENST00000443711 KIF1CO43896 1103 aaKnown RBP15.2■□□□□ 0.02
USP40-206ENST00000443711 KATNA1O75449 491 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 RASSF9O75901 435 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 SUPT7LO94864 414 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 DKK1O94907 266 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 RPS17P08708 135 aaKnown RBP15.2■□□□□ 0.02
USP40-206ENST00000443711 GNAZP19086 355 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 NR1D1P20393 614 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 NAGLUP54802 743 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 WDR4P57081 412 aaKnown RBP15.2■□□□□ 0.02
USP40-206ENST00000443711 INSM1Q01101 510 aaPredicted RBP15.2■□□□□ 0.02
USP40-206ENST00000443711 GTF2H2Q13888 395 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 CFAP157Q5JU67 520 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 SNAP47Q5SQN1 464 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 KIAA1614Q5VZ46 1190 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 GTF2H2CQ6P1K8 395 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 ZNF574Q6ZN55 896 aaPredicted RBP15.2■□□□□ 0.02
USP40-206ENST00000443711 RBM44Q6ZP01 1051 aaKnown RBP15.2■□□□□ 0.02
USP40-206ENST00000443711 TMPRSS9Q7Z410 1059 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 GOLGA7Q7Z5G4 137 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 ARFGAP2Q8N6H7 521 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 ZNF483Q8TF39 744 aaPredicted RBP15.2■□□□□ 0.02
USP40-206ENST00000443711 ZUFSPQ96AP4 578 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 TMEM74Q96NL1 305 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 TMEM237Q96Q45 408 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 MECRQ9BV79 373 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 PITPNM3Q9BZ71 974 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 MLXIPLQ9NP71 852 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 TMEM9Q9P0T7 183 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 SEMA5BQ9P283 1151 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 SNX7Q9UNH6 387 aa15.2■□□□□ 0.02
USP40-206ENST00000443711 DNAH14Q0VDD8 3507 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 IGHV5-10-1A0A0J9YXX1 117 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 WDR91A4D1P6 747 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 TMX2-CTNND1H3BSU7 103 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 MAP3K7O43318 606 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 NEFHP12036 1026 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 MPSTP25325 297 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 GRIA3P42263 894 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 LSSP48449 732 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 CLCQ05315 142 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 TRA2AQ13595 282 aaKnown RBP eCLIP15.19■□□□□ 0.02
USP40-206ENST00000443711 CDCP2Q5VXM1 449 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 FIGLAQ6QHK4 219 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 DHRS13Q6UX07 377 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 PRSS42Q7Z5A4 293 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 KMT5CQ86Y97 462 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 SLITRK4Q8IW52 837 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 FAM20CQ8IXL6 584 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 PPP1R14CQ8TAE6 165 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 MDM1Q8TC05 714 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 SLC5A11Q8WWX8 675 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 NEIL2Q969S2 332 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 PPM1MQ96MI6 270 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 TRAPPC9Q96Q05 1148 aa15.19■□□□□ 0.02
USP40-206ENST00000443711 DPH7Q9BTV6 452 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms