RNA–Protein interactions for RNA: ENST00000413899.1

HMGB1P11-201, Transcript of high mobility group box 1 pseudogene 11, humanhuman

BASIC

Gene HMGB1P11, Length 637 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P11-201ENST00000413899 XKR3Q5GH77 459 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 KRBOX4Q5JUW0 171 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 ERN2Q76MJ5 926 aaKnown RBP3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 RTN4RL2Q86UN3 420 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 MMD2Q8IY49 270 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 LSMEM2Q8N112 164 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 EID3Q8N140 333 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 CAMKVQ8NCB2 501 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 PIGBQ92521 554 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 SECISBP2LQ93073 1101 aaKnown RBP3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 OTUB1Q96FW1 271 aaPredicted RBP3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 URM1Q9BTM9 101 aaKnown RBP3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 PANK2Q9BZ23 570 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 MTMR12Q9C0I1 747 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 P4HTMQ9NXG6 502 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 RNF150Q9ULK6 438 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 TMED3Q9Y3Q3 217 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 LIPGQ9Y5X9 500 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 ABCC1P33527 1531 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 KDM5DQ9BY66 1539 aa3.39□□□□□ -1.87
HMGB1P11-201ENST00000413899 NAIPQ13075 1403 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 MIA2Q96PC5 1412 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 DEPDC5O75140 1603 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 A0A087WW49 117 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 CASTOR2A6NHX0 329 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 NR5A2O00482 541 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 AP5Z1O43299 807 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 TRMUO75648 421 aaKnown RBP3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 IGLV1-44P01699 117 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 JAK1P23458 1154 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 PTAFRP25105 342 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 CCR10P46092 362 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 ATP12AP54707 1039 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 CAMK2DQ13557 499 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 TUBB2AQ13885 445 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 VEZF1Q14119 521 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 ZNF273Q14593 569 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 TNIP1Q15025 636 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 HERC3Q15034 1050 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 UGP2Q16851 508 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 SLC35D3Q5M8T2 416 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 FFAR4Q5NUL3 377 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 ARHGEF16Q5VV41 709 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 ZNF790Q6PG37 636 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 IL17RELQ6ZVW7 336 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 SLFN11Q7Z7L1 901 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 TLK2Q86UE8 772 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 CDK20Q8IZL9 346 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 KIRREL3Q8IZU9 778 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 NDUFAF2Q8N183 169 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 SLC4A11Q8NBS3 891 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 DDHD1Q8NEL9 900 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 OR4C3Q8NH37 302 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 SUSD6Q92537 303 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 EXT2Q93063 718 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 RADILQ96JH8 1075 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 EGFL8Q99944 293 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 TUBB2BQ9BVA1 445 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 AP1M1Q9BXS5 423 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 SHARPINQ9H0F6 387 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 TLE6Q9H808 572 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 SCRT2Q9NQ03 307 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 FAM207AQ9NSI2 230 aaPredicted RBP3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 TBC1D7Q9P0N9 293 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 GIMAP2Q9UG22 337 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 MAN1B1Q9UKM7 699 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 WDR83OSQ9Y284 106 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 ATP10BO94823 1461 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 SHANK2Q9UPX8 1470 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 GPATCH8Q9UKJ3 1502 aaKnown RBP3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 RAB3GAP2Q9H2M9 1393 aa3.38□□□□□ -1.87
HMGB1P11-201ENST00000413899 MROH1Q8NDA8 1641 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 DAPK1P53355 1430 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 PRG4Q92954 1404 aaPredicted RBP3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 UHRF1BP1LA0JNW5 1464 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 MAGI2Q86UL8 1455 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 TEX14Q8IWB6 1497 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 A0A087X002 238 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 TRAV24A0A0B4J272 114 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 ZG16O60844 167 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 GLRA3O75311 464 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 ATP6AP2O75787 350 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 CDC123O75794 336 aaPredicted RBP3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 APOHP02749 345 aaPredicted RBP3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 VTNP04004 478 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 RAF1P04049 648 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 QDPRP09417 244 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 ZNF26P17031 533 aaPredicted RBP3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 PSMA3P25788 255 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 ALDH4A1P30038 563 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 CDC25CP30307 473 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 CSTF2P33240 577 aaKnown RBP eCLIP3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 HSPA4P34932 840 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 VAMP7P51809 220 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 DLK1P80370 383 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 PPARDQ03181 441 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 PHKG1Q16816 387 aa3.37□□□□□ -1.87
HMGB1P11-201ENST00000413899 TCTE1Q5JU00 501 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms