RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 IMPA1P29218 277 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 SKIV2L2P42285 1042 aaKnown RBP18.25■□□□□ 0.51
SF3A1-202ENST00000411423 VSX2P58304 361 aaPredicted RBP18.25■□□□□ 0.51
SF3A1-202ENST00000411423 SNRPNP63162 240 aaKnown RBP18.25■□□□□ 0.51
SF3A1-202ENST00000411423 DCDP81605 110 aaKnown RBP18.25■□□□□ 0.51
SF3A1-202ENST00000411423 TAP2Q03519 686 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 ARHGAP19Q14CB8 494 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 NKAIN1Q4KMZ8 207 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 SYT10Q6XYQ8 523 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 MBOAT1Q6ZNC8 495 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 TTLL10Q6ZVT0 673 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 UBE2R2Q712K3 238 aaPredicted RBP18.25■□□□□ 0.51
SF3A1-202ENST00000411423 PAQR7Q86WK9 346 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 RAB42Q8N4Z0 105 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 FBXO36Q8NEA4 188 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 SPATA4Q8NEY3 305 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 THAP4Q8WY91 577 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 SMPDL3AQ92484 453 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 OLFM1Q99784 485 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 DPH2Q9BQC3 489 aaPredicted RBP18.25■□□□□ 0.51
SF3A1-202ENST00000411423 SELENOSQ9BQE4 189 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 NDC1Q9BTX1 674 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 FAM114A2Q9NRY5 505 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 TAC3Q9UHF0 121 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 IKZF3Q9UKT9 509 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 SRPK3Q9UPE1 567 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 PSAT1Q9Y617 370 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 SEC16AO15027 2179 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 HELZ2Q9BYK8 2649 aaKnown RBP18.24■□□□□ 0.51
SF3A1-202ENST00000411423 FITM1A5D6W6 292 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 J3QKU1 62 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 MASP2O00187 686 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 RFPL1O75677 317 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 ALAS2P22557 587 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 ARL4CP56559 192 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 PDIA2Q13087 525 aaKnown RBP18.24■□□□□ 0.51
SF3A1-202ENST00000411423 TSTA3Q13630 321 aaPredicted RBP18.24■□□□□ 0.51
SF3A1-202ENST00000411423 ZXDCQ2QGD7 858 aaPredicted RBP18.24■□□□□ 0.51
SF3A1-202ENST00000411423 ZC3H12BQ5HYM0 836 aaKnown RBP18.24■□□□□ 0.51
SF3A1-202ENST00000411423 WASHC2DQ5SRD0 308 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 ZNF425Q6IV72 752 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 GALNT7Q86SF2 657 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 METTL27Q8N6F8 245 aaPredicted RBP18.24■□□□□ 0.51
SF3A1-202ENST00000411423 LRRC39Q96DD0 335 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 PLCD4Q9BRC7 762 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 DPH5Q9H2P9 285 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 PPANQ9NQ55 473 aaKnown RBP18.24■□□□□ 0.51
SF3A1-202ENST00000411423 CUTCQ9NTM9 273 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 TXLNGQ9NUQ3 528 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 ABCF3Q9NUQ8 709 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 CUEDC1Q9NWM3 386 aaPredicted RBP18.24■□□□□ 0.51
SF3A1-202ENST00000411423 IFT80Q9P2H3 777 aaPredicted RBP18.24■□□□□ 0.51
SF3A1-202ENST00000411423 TRMT6Q9UJA5 497 aaKnown RBP18.24■□□□□ 0.51
SF3A1-202ENST00000411423 PDE10AQ9Y233 779 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 TNRC6AQ8NDV7 1962 aaKnown RBP18.24■□□□□ 0.51
SF3A1-202ENST00000411423 MED13Q9UHV7 2174 aa18.24■□□□□ 0.51
SF3A1-202ENST00000411423 C9J4A7 227 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 SMAPO00193 183 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 PIAS1O75925 651 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 UMODP07911 640 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 CMPK1P30085 196 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 RPA3P35244 121 aaPredicted RBP18.23■□□□□ 0.51
SF3A1-202ENST00000411423 ETF1P62495 437 aaKnown RBP18.23■□□□□ 0.51
SF3A1-202ENST00000411423 CBLBQ13191 982 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 ATP1A4Q13733 1029 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 LACTB2Q53H82 288 aaPredicted RBP18.23■□□□□ 0.51
SF3A1-202ENST00000411423 HECTD2Q5U5R9 776 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 ICE2Q659A1 982 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 TMEM207Q6UWW9 146 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 KIAA0408Q6ZU52 694 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 SEC14L1Q92503 715 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 C10orf90Q96M02 699 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 ING2Q9H160 280 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 MRPS30Q9NP92 439 aaKnown RBP18.23■□□□□ 0.51
SF3A1-202ENST00000411423 SMYD2Q9NRG4 433 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 TAS2R13Q9NYV9 303 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 GRHL1Q9NZI5 618 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 SH2B3Q9UQQ2 575 aa18.23■□□□□ 0.51
SF3A1-202ENST00000411423 PTRH2Q9Y3E5 179 aaKnown RBP18.23■□□□□ 0.51
SF3A1-202ENST00000411423 HEMK1Q9Y5R4 338 aaPredicted RBP18.23■□□□□ 0.51
SF3A1-202ENST00000411423 A0A1B0GX78 115 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 EIF3FO00303 357 aaPredicted RBP18.22■□□□□ 0.51
SF3A1-202ENST00000411423 DSCR3O14972 297 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 ONECUT2O95948 504 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 FDXRP22570 491 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 CASQ1P31415 396 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 OTX2P32243 289 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 OR1D4P47884 311 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 CCL11P51671 97 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 PRDX1Q06830 199 aaKnown RBP18.22■□□□□ 0.51
SF3A1-202ENST00000411423 FRG1Q14331 258 aaKnown RBP18.22■□□□□ 0.51
SF3A1-202ENST00000411423 TRADDQ15628 312 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 PHKG1Q16816 387 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 GPATCH11Q8N954 259 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 LINGO1Q96FE5 620 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 ZFYVE21Q9BQ24 234 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 DHRS4Q9BTZ2 278 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 EPN3Q9H201 632 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 MOCS1Q9NZB8 636 aa18.22■□□□□ 0.51
SF3A1-202ENST00000411423 NDOR1Q9UHB4 597 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms