RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 DHRS1Q96LJ7 313 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 NDC1Q9BTX1 674 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 EIF5A2Q9GZV4 153 aaKnown RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 THUMPD1Q9NXG2 353 aaKnown RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 COL20A1Q9P218 1284 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 MGAT4CQ9UBM8 478 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 HECW2Q9P2P5 1572 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 LRRN3E7EW58 273 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 H3BSH0 61 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 NUAK1O60285 661 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 PCDHGA12O60330 932 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 RAB36O95755 333 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 SRPRAP08240 638 aaKnown RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 CHRM1P11229 460 aaPredicted RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 ARSFP54793 590 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 CERS6Q6ZMG9 384 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 SLC30A8Q8IWU4 369 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 MTERF1Q99551 399 aaKnown RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 LRRN3Q9H3W5 708 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 MYH6P13533 1939 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 EEF1E1O43324 174 aaKnown RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 MAFO75444 373 aaPredicted RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 HMGN1P05114 100 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 PIGGQ5H8A4 983 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 UBE2UQ5VVX9 321 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 ALKBH2Q6NS38 261 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 DTX3Q8N9I9 347 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 RIPOR3Q96MK2 946 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 ADAM2Q99965 735 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 PCDHGB1Q9Y5G3 927 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 DLC1Q96QB1 1528 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 TSPAN1O60635 241 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 CREG1O75629 220 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 SIX3O95343 332 aaPredicted RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 ALPPP05187 535 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 UBA1P22314 1058 aaKnown RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 EVI2BP34910 448 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 SPAM1P38567 509 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 CDKN2CP42773 168 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 UFM1P61960 85 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 TCEAL6Q6IPX3 200 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 SERPINA13PQ6UXR4 307 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 METTL3Q86U44 580 aaKnown RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 C3orf58Q8NDZ4 430 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 XPNPEP1Q9NQW7 623 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 MRPL17Q9NRX2 175 aaKnown RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 FLRT1Q9NZU1 646 aa11.58□□□□□ -0.56
SYNPO-202ENST00000394243 MRPS33Q9Y291 106 aaKnown RBP11.58□□□□□ -0.56
SYNPO-202ENST00000394243 XYLBO75191 536 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 SOX14O95416 240 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 CHRNA1P02708 482 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 LGALS2P05162 132 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 PPM1AP35813 382 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 FOXM1Q08050 763 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 SEC23BQ15437 767 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 UCK2Q9BZX2 261 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 TIMM8BQ9Y5J9 83 aaPredicted RBP11.57□□□□□ -0.56
SYNPO-202ENST00000394243 SAP18O00422 153 aaKnown RBP11.57□□□□□ -0.56
SYNPO-202ENST00000394243 KLF11O14901 512 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 GJB1P08034 283 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 AHCYP23526 432 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 KHKP50053 298 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 HMGCS1Q01581 520 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 PARP15Q460N3 678 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 LGALS12Q96DT0 336 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 SLC35A5Q9BS91 424 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 SLC25A51Q9H1U9 297 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 SLA2Q9H6Q3 261 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 EIF2B3Q9NR50 452 aaKnown RBP11.57□□□□□ -0.56
SYNPO-202ENST00000394243 ABCB8Q9NUT2 735 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 SEC14L4Q9UDX3 406 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 RGL2O15211 777 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 H1F0P07305 194 aaKnown RBP11.57□□□□□ -0.56
SYNPO-202ENST00000394243 NFKB2Q00653 900 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 NXPE1Q8N323 547 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 FCAMRQ8WWV6 532 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 C14orf105Q9NVL8 296 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 NR2E3Q9Y5X4 410 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 AGLP35573 1532 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 TRAV19A0A0A6YYK7 116 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 SLC19A2O60779 497 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 ARL6IP5O75915 188 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 FPR1P21462 350 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 PSEN2P49810 448 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 PTGR1Q14914 329 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 RABL3Q5HYI8 236 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 ADGRG6Q86SQ4 1221 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 ZNF227Q86WZ6 799 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 CHERPQ8IWX8 916 aaKnown RBP11.57□□□□□ -0.56
SYNPO-202ENST00000394243 PDZD9Q8IXQ8 264 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 SAMD12Q8N8I0 201 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 ZNF557Q8N988 423 aaPredicted RBP11.57□□□□□ -0.56
SYNPO-202ENST00000394243 MAPKAP1Q9BPZ7 522 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 IDI2Q9BXS1 227 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 ZIM2Q9NZV7 527 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 PTCH2Q9Y6C5 1203 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 A0A1W2PQH9 124 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 RPS12P25398 132 aaKnown RBP11.57□□□□□ -0.56
SYNPO-202ENST00000394243 RASGEF1BQ0VAM2 473 aa11.57□□□□□ -0.56
SYNPO-202ENST00000394243 ILF3Q12906 894 aaKnown RBP eCLIP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms