RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 NLGN4YQ8NFZ3 816 aaPredicted RBP12.84□□□□□ -0.35
VPS28-202ENST00000377348 SLC44A1Q8WWI5 657 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 PYCR2Q96C36 320 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 DPH7Q9BTV6 452 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 DERL2Q9GZP9 239 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 CHRNA10Q9GZZ6 450 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 CCDC177Q9NQR7 707 aaPredicted RBP12.84□□□□□ -0.35
VPS28-202ENST00000377348 INTS7Q9NVH2 962 aaKnown RBP12.84□□□□□ -0.35
VPS28-202ENST00000377348 CUEDC1Q9NWM3 386 aaPredicted RBP12.84□□□□□ -0.35
VPS28-202ENST00000377348 SH2B3Q9UQQ2 575 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 SSUH2Q9Y2M2 353 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 MGAQ8IWI9 3026 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 A0A0J9YVX5 310 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 PABPN1LA6NDY0 278 aaKnown RBP12.83□□□□□ -0.36
VPS28-202ENST00000377348 H3BMH7 237 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 SLU7O95391 586 aaKnown RBP12.83□□□□□ -0.36
VPS28-202ENST00000377348 INHBAP08476 426 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 ENO2P09104 434 aaPredicted RBP12.83□□□□□ -0.36
VPS28-202ENST00000377348 MSL3P1P0C860 447 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 CD1DP15813 335 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 ITGA1P56199 1179 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 AP1S2P56377 157 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 IRF9Q00978 393 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 PRDX1Q06830 199 aaKnown RBP12.83□□□□□ -0.36
VPS28-202ENST00000377348 MANEAQ5SRI9 462 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 BROXQ5VW32 411 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 PRAMEF13Q5VWM6 474 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 FRMPD2BQ6IN97 320 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 TRMT10CQ7L0Y3 403 aaKnown RBP12.83□□□□□ -0.36
VPS28-202ENST00000377348 MCATQ8IVS2 390 aaKnown RBP12.83□□□□□ -0.36
VPS28-202ENST00000377348 OR8K5Q8NH50 307 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 ANKRD7Q92527 254 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 ZUFSPQ96AP4 578 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 PTERQ96BW5 349 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 FBXL8Q96CD0 374 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 UBXN10Q96LJ8 280 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 CCNL2Q96S94 520 aaPredicted RBP12.83□□□□□ -0.36
VPS28-202ENST00000377348 TRIM54Q9BYV2 358 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 EPB41L4BQ9H329 900 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 SNX15Q9NRS6 342 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 STARD5Q9NSY2 213 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 IRAK4Q9NWZ3 460 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 EURLQ9NYK6 297 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 SERTAD3Q9UJW9 196 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 NOVA2Q9UNW9 492 aaKnown RBP12.83□□□□□ -0.36
VPS28-202ENST00000377348 PLCL2Q9UPR0 1127 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 OARD1Q9Y530 152 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 ANKRD12Q6UB98 2062 aa12.83□□□□□ -0.36
VPS28-202ENST00000377348 OR2A25A4D2G3 310 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 NCF1BA6NI72 391 aaPredicted RBP12.82□□□□□ -0.36
VPS28-202ENST00000377348 NCF1CA8MVU1 366 aaPredicted RBP12.82□□□□□ -0.36
VPS28-202ENST00000377348 TARM1B6A8C7 271 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 E7EQ34 232 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 ZNF749O43361 778 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 CPNE3O75131 537 aaKnown RBP12.82□□□□□ -0.36
VPS28-202ENST00000377348 OR2B3O76000 313 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 KRT37O76014 449 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 ALDOAP04075 364 aaKnown RBP12.82□□□□□ -0.36
VPS28-202ENST00000377348 ABHD2P08910 425 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 ATXN8OSP0DMR3 200 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 NCF1P14598 390 aaPredicted RBP12.82□□□□□ -0.36
VPS28-202ENST00000377348 LIFP15018 202 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 TNFRSF8P28908 595 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 CRABP2P29373 138 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 STAT5AP42229 794 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 MSH2P43246 934 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 CSRP3P50461 194 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 VSNL1P62760 191 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 CXADRP78310 365 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 GPS2Q13227 327 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 SLC29A2Q14542 456 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 OR4D1Q15615 310 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 C18orf21Q32NC0 220 aaPredicted RBP12.82□□□□□ -0.36
VPS28-202ENST00000377348 ARHGAP40Q5TG30 622 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 LCN10Q6JVE6 187 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 FBXO42Q6P3S6 717 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 FAM199XQ6PEV8 388 aaPredicted RBP12.82□□□□□ -0.36
VPS28-202ENST00000377348 FRA10AC1Q70Z53 315 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 ADCK2Q7Z695 626 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 ADAMTSL2Q86TH1 951 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 PAQR7Q86WK9 346 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 PLD3Q8IV08 490 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 GPR135Q8IZ08 494 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 ESX1Q8N693 406 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 ZNF655Q8N720 491 aaPredicted RBP12.82□□□□□ -0.36
VPS28-202ENST00000377348 OR56A3Q8NH54 315 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 DCAKDQ8WVC6 231 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 KCTD4Q8WVF5 259 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 EGFL8Q99944 293 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 PLCD4Q9BRC7 762 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 SYNPO2LQ9H987 977 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 ACTR5Q9H9F9 607 aaPredicted RBP12.82□□□□□ -0.36
VPS28-202ENST00000377348 IGSF5Q9NSI5 407 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 PCDHB3Q9Y5E6 796 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 KLK4Q9Y5K2 254 aa12.82□□□□□ -0.36
VPS28-202ENST00000377348 LOC105369274A0A096LPK9 316 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 LOC102723532A0A0G2JNH3 316 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 EXOC1LA0A1B0GW35 172 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 H7BY64 318 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 CCNDBP1O95273 360 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms