RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 PCDH12Q9NPG4 1184 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 THG1LQ9NWX6 298 aaKnown RBP8.37□□□□□ -1.07
TRIM55-204ENST00000353317 IL36AQ9UHA7 158 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 UTS2RQ9UKP6 389 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 A0A0C4DFX4 3053 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 C16orf96A6NNT2 1141 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 G3V2T6 193 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 K7EQS6 105 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 ADAM23O75077 832 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 NDUFS3O75489 264 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 PRAMEF1O95521 474 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 ANXA6P08133 673 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 SRPRAP08240 638 aaKnown RBP8.37□□□□□ -1.07
TRIM55-204ENST00000353317 GGT1P19440 569 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 MAPK8P45983 427 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 HTR6P50406 440 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 SPCS2Q15005 226 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 NKG7Q16617 165 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 CYP2A13Q16696 494 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 MEP1AQ16819 746 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 RGS21Q2M5E4 152 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 FAM98BQ52LJ0 330 aaKnown RBP8.37□□□□□ -1.07
TRIM55-204ENST00000353317 FNDC3BQ53EP0 1204 aaKnown RBP8.37□□□□□ -1.07
TRIM55-204ENST00000353317 RBM48Q5RL73 367 aaKnown RBP8.37□□□□□ -1.07
TRIM55-204ENST00000353317 LDLRAP1Q5SW96 308 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 ENPP6Q6UWR7 440 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 EFL1Q7Z2Z2 1120 aaKnown RBP8.37□□□□□ -1.07
TRIM55-204ENST00000353317 IGFN1Q86VF2 1251 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 ZDHHC13Q8IUH4 622 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 C8orf59Q8N0T1 100 aaPredicted RBP8.37□□□□□ -1.07
TRIM55-204ENST00000353317 PAF1Q8N7H5 531 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 SIDT2Q8NBJ9 832 aaKnown RBP8.37□□□□□ -1.07
TRIM55-204ENST00000353317 OR56A4Q8NGH8 313 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 LKAAEAR1Q8TD35 194 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 EEF1AKMT1Q8WVE0 214 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 ARRDC3Q96B67 414 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 NRBF2Q96F24 287 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 AURKBQ96GD4 344 aaPredicted RBP8.37□□□□□ -1.07
TRIM55-204ENST00000353317 ZNF583Q96ND8 569 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 TRMT61BQ9BVS5 477 aaKnown RBP8.37□□□□□ -1.07
TRIM55-204ENST00000353317 FUNDC2Q9BWH2 189 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 FAM118AQ9NWS6 357 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 VAPAQ9P0L0 249 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 BLOC1S6Q9UL45 172 aa8.37□□□□□ -1.07
TRIM55-204ENST00000353317 PAIP2BQ9ULR5 123 aaKnown RBP8.37□□□□□ -1.07
TRIM55-204ENST00000353317 SHISA7A6NL88 538 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 C2CD4DB7Z1M9 353 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 ANHXE9PGG2 379 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 ANKRD28O15084 1053 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 POU3F3P20264 500 aaPredicted RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 AGXTP21549 392 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 IDUAP35475 653 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 VASPP50552 380 aaPredicted RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 B4GALNT1Q00973 533 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 CHRNB3Q05901 458 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 PPP1R8Q12972 351 aaKnown RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 NFATC2Q13469 925 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 LAPTM5Q13571 262 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 SPIDRQ14159 915 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 SKIV2LQ15477 1246 aaKnown RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 CTU2Q2VPK5 515 aaKnown RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 HNRNPA1L2Q32P51 320 aaKnown RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 ATP13A5Q4VNC0 1218 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 RFTN2Q52LD8 501 aaPredicted RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 C6orf141Q5SZD1 244 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 SULT1C3Q6IMI6 304 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 LAIR2Q6ISS4 152 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 Q6ZVL8 140 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 Q7L0L9 218 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 TAS2R42Q7RTR8 314 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 CACUL1Q86Y37 369 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 CBARPQ8N350 705 aaPredicted RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 NKAPQ8N5F7 415 aaKnown RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 CHDHQ8NE62 594 aaPredicted RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 FBXO30Q8TB52 745 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 WFIKKN2Q8TEU8 576 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 FIG4Q92562 907 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 HDAC2Q92769 488 aaKnown RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 MBOAT4Q96T53 435 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 DGCR6LQ9BY27 220 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 P2RY12Q9H244 342 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 RAD21L1Q9H4I0 556 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 TMEM165Q9HC07 324 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 HEBP1Q9NRV9 189 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 TRNAU1APQ9NX07 287 aaKnown RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 PKP3Q9Y446 797 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 PCDHGA4Q9Y5G9 962 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 DGKBQ9Y6T7 804 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 TRBV5-4A0A0C4DH59 114 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 LSM1O15116 133 aaKnown RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 AXIN1O15169 862 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 BCAS1O75363 584 aaPredicted RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 CAPN1P07384 714 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 HTR1BP28222 390 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 ARL1P40616 181 aaPredicted RBP8.36□□□□□ -1.07
TRIM55-204ENST00000353317 OPRL1P41146 370 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 ETV3P41162 512 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 RGS19P49795 217 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 PPP2R2BQ00005 443 aa8.36□□□□□ -1.07
TRIM55-204ENST00000353317 C18orf21Q32NC0 220 aaPredicted RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms