RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ENPP7Q6UWV6 458 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 CLHC1Q8NHS4 586 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 NUDT8Q8WV74 236 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 SLC5A11Q8WWX8 675 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 JADE3Q92613 823 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 CMTM7Q96FZ5 175 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 PDXPQ96GD0 296 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 APIPQ96GX9 242 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 ZBTB18Q99592 522 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 IMP3Q9NV31 184 aaKnown RBP12.95□□□□□ -0.34
HMGB1-202ENST00000339872 GID8Q9NWU2 228 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 LEF1Q9UJU2 399 aaPredicted RBP12.95□□□□□ -0.34
HMGB1-202ENST00000339872 DLGAP4Q9Y2H0 992 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 PCDHGA11Q9Y5H2 935 aa12.95□□□□□ -0.34
HMGB1-202ENST00000339872 SERTM1A2A2V5 107 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 PDZK1P1A8MUH7 402 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 PI15O43692 258 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 BCKDHAP12694 445 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 SESN3P58005 492 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 ZNF33BQ06732 778 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 FLOT2Q14254 428 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 SLBPQ14493 270 aaKnown RBP eCLIP12.94□□□□□ -0.34
HMGB1-202ENST00000339872 NFATC4Q14934 902 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 TBC1D21Q8IYX1 336 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 OR7G3Q8NG95 312 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 SLC26A7Q8TE54 656 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 BMFQ96LC9 184 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 APOLD1Q96LR9 279 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 OR2M4Q96R27 311 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 FERD3LQ96RJ6 166 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 INSM2Q96T92 566 aaPredicted RBP12.94□□□□□ -0.34
HMGB1-202ENST00000339872 DPY30Q9C005 99 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 CYP8B1Q9UNU6 501 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 PCM1Q15154 2024 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 FXYD1O00168 92 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 HOXC4P09017 264 aaPredicted RBP12.94□□□□□ -0.34
HMGB1-202ENST00000339872 ERGP11308 486 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 IDSP22304 550 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 DGKQP52824 942 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 E2F2Q14209 437 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 TLR1Q15399 786 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 TCEA2Q15560 299 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 ATG9BQ674R7 924 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 MED27Q6P2C8 311 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 OR1E3Q8WZA6 343 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 LRRC58Q96CX6 371 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 SCARF2Q96GP6 870 aaPredicted RBP12.94□□□□□ -0.34
HMGB1-202ENST00000339872 WDR92Q96MX6 357 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 HOPXQ9BPY8 73 aaPredicted RBP12.94□□□□□ -0.34
HMGB1-202ENST00000339872 EFCAB11Q9BUY7 163 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 ACAT2Q9BWD1 397 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 LMAN1LQ9HAT1 526 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 C2orf42Q9NWW7 574 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 TMEM181Q9P2C4 612 aa12.94□□□□□ -0.34
HMGB1-202ENST00000339872 DYTNA2CJ06 578 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 MAGEB17A8MXT2 336 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 KCNJ13O60928 360 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 C1GALT1C1LP0DN25 315 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 AMD1P17707 334 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 HTR1BP28222 390 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 MAPK1P28482 360 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 AKT2P31751 481 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 ATXN3P54252 364 aaPredicted RBP12.93□□□□□ -0.34
HMGB1-202ENST00000339872 AP2B1P63010 937 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 MEF2AQ02078 507 aaPredicted RBP12.93□□□□□ -0.34
HMGB1-202ENST00000339872 ARHGAP19Q14CB8 494 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 TPRG1LQ5T0D9 272 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 PRMT9Q6P2P2 845 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 SLC2A7Q6PXP3 512 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 LCTLQ6UWM7 567 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 GCNT7Q6ZNI0 430 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 SYT13Q7L8C5 426 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 RD3Q7Z3Z2 195 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 MINDY1Q8N5J2 469 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 KRTCAP2Q8N6L1 136 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 HUS1BQ8NHY5 278 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 PYDC1Q8WXC3 89 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 GPATCH1Q9BRR8 931 aaKnown RBP12.93□□□□□ -0.34
HMGB1-202ENST00000339872 C6orf106Q9H6K1 298 aaPredicted RBP12.93□□□□□ -0.34
HMGB1-202ENST00000339872 EBF2Q9HAK2 575 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 SPATA6Q9NWH7 488 aaPredicted RBP12.93□□□□□ -0.34
HMGB1-202ENST00000339872 VPS29Q9UBQ0 182 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 TMED5Q9Y3A6 229 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 PIPSLA2A3N6 862 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 PRORSD1PA6NEY8 169 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 PRR19A6NJB7 356 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 OR52A4PA6NMU1 304 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 NPIPB8E9PQR5 432 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 FKBP6O75344 327 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 SH3BGRLO75368 114 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 PRPS2P11908 318 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 CDH1P12830 882 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 MS4A2Q01362 244 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 LRRC32Q14392 662 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 KRT33BQ14525 404 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 CLCA4Q14CN2 919 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 UBXN2BQ14CS0 331 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 FAM174BQ3ZCQ3 159 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 PAGE2BQ5JRK9 111 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 SAMD4BQ5PRF9 694 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms