RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 IQCCQ4KMZ1 466 aa14.36□□□□□ -0.11
TCOF1-201ENST00000323668 GPAT3Q53EU6 434 aa14.36□□□□□ -0.11
TCOF1-201ENST00000323668 LDLRAD1Q5T700 205 aa14.36□□□□□ -0.11
TCOF1-201ENST00000323668 C1orf52Q8N6N3 182 aaKnown RBP14.36□□□□□ -0.11
TCOF1-201ENST00000323668 TMCO6Q96DC7 493 aa14.36□□□□□ -0.11
TCOF1-201ENST00000323668 SEMA3GQ9NS98 782 aa14.36□□□□□ -0.11
TCOF1-201ENST00000323668 ZNF624Q9P2J8 865 aaPredicted RBP14.36□□□□□ -0.11
TCOF1-201ENST00000323668 GMPR2Q9P2T1 348 aaKnown RBP14.36□□□□□ -0.11
TCOF1-201ENST00000323668 PELI3Q8N2H9 469 aa14.36□□□□□ -0.11
TCOF1-201ENST00000323668 NXPE1Q8N323 547 aa14.36□□□□□ -0.11
TCOF1-201ENST00000323668 OR2AP1Q8NGE2 309 aa14.36□□□□□ -0.11
TCOF1-201ENST00000323668 KCNS3Q9BQ31 491 aa14.36□□□□□ -0.11
TCOF1-201ENST00000323668 CNPPD1Q9BV87 410 aa14.36□□□□□ -0.11
TCOF1-201ENST00000323668 PTGFRNQ9P2B2 879 aa14.36□□□□□ -0.11
TCOF1-201ENST00000323668 PRRC2BQ5JSZ5 2229 aaKnown RBP14.36□□□□□ -0.11
TCOF1-201ENST00000323668 LOC285095A0A1B0GVY8 99 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 AP2A2O94973 939 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 PTSQ03393 145 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 LRRC73Q5JTD7 316 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 LETMD1Q6P1Q0 360 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 DSG4Q86SJ6 1040 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 RETREG1Q9H6L5 497 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 ZNF232Q9UNY5 417 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 POFUT2Q9Y2G5 429 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 OARD1Q9Y530 152 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 M0QX08 132 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 AGRPO00253 132 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 SLC9A3R1O14745 358 aaPredicted RBP14.35□□□□□ -0.11
TCOF1-201ENST00000323668 WNT9AO14904 365 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 OAZ2O95190 189 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 KDELR2P33947 212 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 COPZ1P61923 177 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 NHSL2Q5HYW2 709 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 DNAJB7Q7Z6W7 309 aaPredicted RBP14.35□□□□□ -0.11
TCOF1-201ENST00000323668 GATAD2AQ86YP4 633 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 CFAP206Q8IYR0 622 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 DPP10Q8N608 796 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 ABHD11Q8NFV4 315 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 ANKHQ9HCJ1 492 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 RNF6Q9Y252 685 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 CASKO14936 926 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 B4GAT1O43505 415 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 MTX2O75431 263 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 ATE1O95260 518 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 ZNF865P0CJ78 1059 aaPredicted RBP14.35□□□□□ -0.11
TCOF1-201ENST00000323668 MAP2K4P45985 399 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 ACLYP53396 1101 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 PLA2G16P53816 162 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 SNAPC1Q16533 368 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 VMACQ2NL98 169 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 TYSND1Q2T9J0 566 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 TPRG1Q6ZUI0 275 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 CACTIN-AS1Q8N1I8 211 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 LGALS12Q96DT0 336 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 GPR78Q96P69 363 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 SPRTNQ9H040 489 aaPredicted RBP14.35□□□□□ -0.11
TCOF1-201ENST00000323668 RPRD1BQ9NQG5 326 aaKnown RBP14.35□□□□□ -0.11
TCOF1-201ENST00000323668 OAS3Q9Y6K5 1087 aaKnown RBP14.35□□□□□ -0.11
TCOF1-201ENST00000323668 ITGB1P05556 798 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 PTPN5P54829 565 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 DCAF4L2Q8NA75 395 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 CRELD1Q96HD1 420 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 MAP10Q9P2G4 905 aa14.35□□□□□ -0.11
TCOF1-201ENST00000323668 CARNS1A5YM72 827 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 GRXCR2A6NFK2 248 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 PLOD2O00469 737 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 STX11O75558 287 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 CDKN1CP49918 316 aaPredicted RBP14.34□□□□□ -0.11
TCOF1-201ENST00000323668 MXD1Q05195 221 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 SCARB2Q14108 478 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 ZNF544Q6NX49 715 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 ARRDC2Q8TBH0 407 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 USP7Q93009 1102 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 COL21A1Q96P44 957 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 MMP27Q9H306 513 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 CD300AQ9UGN4 299 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 GJB5O95377 273 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 MT-ND2P03891 347 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 PCSK6P29122 969 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 ADAM17P78536 824 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 NOXRED1Q6NXP6 359 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 MRPL10Q7Z7H8 261 aaKnown RBP14.34□□□□□ -0.11
TCOF1-201ENST00000323668 FUNDC1Q8IVP5 155 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 NCSTNQ92542 709 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 PPP1R16AQ96I34 528 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 MAGIXQ9H6Y5 334 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 C11orf16Q9NQ32 467 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 VPS51Q9UID3 782 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 FAM240BA0A1B0GVZ2 78 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 FUOMA2VDF0 154 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 FGBP02675 491 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 HMGCLP35914 325 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 FEN1P39748 380 aaKnown RBP14.34□□□□□ -0.11
TCOF1-201ENST00000323668 TMEM220Q6QAJ8 160 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 LAPTM4BQ86VI4 370 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 CLIP4Q8N3C7 705 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 AIF1LQ9BQI0 150 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 POLR2J2Q9GZM3 115 aaKnown RBP14.34□□□□□ -0.11
TCOF1-201ENST00000323668 PLAC1Q9HBJ0 212 aa14.34□□□□□ -0.11
TCOF1-201ENST00000323668 ABCA3Q99758 1704 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms