RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 T-ENOLP0DO92 83 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 CTSEP14091 401 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 JUNDP17535 347 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 CD22P20273 847 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 PKLRP30613 574 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 KRT6CP48668 564 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 RAB28P51157 221 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 DOC2AQ14183 400 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 PRAMEF14Q5SWL7 426 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 PRAMEF13Q5VWM6 474 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 IYDQ6PHW0 289 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 Q6ZSR9 355 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 LPCAT2Q7L5N7 544 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 LINC01555Q8NAE3 123 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 OR52E1Q8NGJ3 308 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 OR2T11Q8NH01 316 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 SMPDL3AQ92484 453 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 TUBGCP3Q96CW5 907 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 WDR34Q96EX3 536 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 CATSPER2Q96P56 530 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 ARL8BQ9NVJ2 186 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 RIC8BQ9NVN3 520 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 TAAR2Q9P1P5 351 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 APOBEC3BQ9UH17 382 aaKnown RBP17.82■□□□□ 0.44
CLN3-254ENST00000637050 DYRK1BQ9Y463 629 aa17.82■□□□□ 0.44
CLN3-254ENST00000637050 PRAMEF33A0A0G2JMD5 474 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 VILLO15195 856 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 UBDO15205 165 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 CELA2BP08218 269 aaPredicted RBP17.81■□□□□ 0.44
CLN3-254ENST00000637050 NME1P15531 152 aaKnown RBP17.81■□□□□ 0.44
CLN3-254ENST00000637050 HNF4AP41235 474 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 NXPH1P58417 271 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 TSTA3Q13630 321 aaPredicted RBP17.81■□□□□ 0.44
CLN3-254ENST00000637050 ZRSR2Q15696 482 aaKnown RBP17.81■□□□□ 0.44
CLN3-254ENST00000637050 GRHL2Q6ISB3 625 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 OGFOD2Q6N063 350 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 ARMCX6Q7L4S7 300 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 TRIM46Q7Z4K8 759 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 C2orf73Q8N5S3 287 aaPredicted RBP17.81■□□□□ 0.44
CLN3-254ENST00000637050 TMEM105Q8N8V8 129 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 OR2L8Q8NGY9 312 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 HAUS8Q9BT25 410 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 LRRC61Q9BV99 259 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 EHD1Q9H4M9 534 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 FARSBQ9NSD9 589 aaKnown RBP17.81■□□□□ 0.44
CLN3-254ENST00000637050 SNX6Q9UNH7 406 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 ICKQ9UPZ9 632 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 SH2B3Q9UQQ2 575 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 CCL27Q9Y4X3 112 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 CACNA1IQ9P0X4 2223 aa17.81■□□□□ 0.44
CLN3-254ENST00000637050 A0A1W2PPV9 198 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 BCAT2O15382 392 aaPredicted RBP17.8■□□□□ 0.44
CLN3-254ENST00000637050 KDM1AO60341 852 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 UNC5CO95185 931 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 CBX6O95503 412 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 LBPP18428 481 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 ADSLP30566 484 aaPredicted RBP17.8■□□□□ 0.44
CLN3-254ENST00000637050 SLC19A1P41440 591 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 CSTF1Q05048 431 aaKnown RBP17.8■□□□□ 0.44
CLN3-254ENST00000637050 THEMIS2Q5TEJ8 643 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 ATG9BQ674R7 924 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 TAF8Q7Z7C8 310 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 C11orf74Q86VG3 221 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 CXorf40BQ96DE9 158 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 PTCD3Q96EY7 689 aaKnown RBP17.8■□□□□ 0.44
CLN3-254ENST00000637050 TUBB6Q9BUF5 446 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 PCBD2Q9H0N5 130 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 GIMAP2Q9UG22 337 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 ZNF490Q9ULM2 529 aaPredicted RBP17.8■□□□□ 0.44
CLN3-254ENST00000637050 G3BP2Q9UN86 482 aaKnown RBP17.8■□□□□ 0.44
CLN3-254ENST00000637050 ABCA7Q8IZY2 2146 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 FANCMQ8IYD8 2048 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 SERTM1A2A2V5 107 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 H0YIV9 168 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 SLC28A1O00337 649 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 SLC22A2O15244 555 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 ALDOCP09972 364 aaKnown RBP17.8■□□□□ 0.44
CLN3-254ENST00000637050 XRCC1P18887 633 aaPredicted RBP17.8■□□□□ 0.44
CLN3-254ENST00000637050 KLF10Q13118 480 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 PRRT3Q5FWE3 981 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.8■□□□□ 0.44
CLN3-254ENST00000637050 SFRP1Q8N474 314 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 GAB3Q8WWW8 586 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 SLC5A11Q8WWX8 675 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 NSL1Q96IY1 281 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 MARK4Q96L34 752 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 HBEGFQ99075 208 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 ELOVL6Q9H5J4 265 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 XKR8Q9H6D3 395 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 TXLNGQ9NUQ3 528 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 MRGBPQ9NV56 204 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 COPG1Q9Y678 874 aaKnown RBP17.8■□□□□ 0.44
CLN3-254ENST00000637050 CAPN7Q9Y6W3 813 aa17.8■□□□□ 0.44
CLN3-254ENST00000637050 OR5K4A6NMS3 321 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 PEX11AO75192 247 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 ATP5HO75947 161 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 PDYNP01213 254 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 C1GALT1C1LP0DN25 315 aa17.79■□□□□ 0.44
CLN3-254ENST00000637050 VARSP26640 1264 aaKnown RBP17.79■□□□□ 0.44
CLN3-254ENST00000637050 CSNK1EP49674 416 aaKnown RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms