RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 ARHGDIAP52565 204 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 CCL23P55773 120 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 COL9A2Q14055 689 aaPredicted RBP13.68□□□□□ -0.22
COL6A1-207ENST00000612273 ZXDCQ2QGD7 858 aaPredicted RBP13.68□□□□□ -0.22
COL6A1-207ENST00000612273 P2RY8Q86VZ1 359 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 ZSWIM9Q86XI8 627 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 SYT12Q8IV01 421 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 PLD3Q8IV08 490 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 RBM12BQ8IXT5 1001 aaKnown RBP13.68□□□□□ -0.22
COL6A1-207ENST00000612273 PROX1Q92786 737 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 MED8Q96G25 268 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 MAGED4Q96JG8 741 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 IL37Q9NZH6 218 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 CPQQ9Y646 472 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 NPIPB15A6NHN6 443 aaPredicted RBP13.68□□□□□ -0.22
COL6A1-207ENST00000612273 OR2AG2A6NM03 316 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 SLC28A1O00337 649 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 GAPDHSO14556 408 aaPredicted RBP13.68□□□□□ -0.22
COL6A1-207ENST00000612273 PRRG1O14668 218 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 NPPAP01160 153 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 GALTP07902 379 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 SDC1P18827 310 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 MASP1P48740 699 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 MVKQ03426 396 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 MADCAM1Q13477 382 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 ATP13A5Q4VNC0 1218 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 CATSPEREQ5SY80 951 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 CPZQ66K79 652 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 ALG1LQ6GMV1 187 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 PIK3C3Q8NEB9 887 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 SPPL2AQ8TCT8 520 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 PIH1D2Q8WWB5 315 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 UPF1Q92900 1129 aaKnown RBP eCLIP13.68□□□□□ -0.22
COL6A1-207ENST00000612273 CLMPQ9H6B4 373 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 RNF167Q9H6Y7 350 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 C8orf4Q9NR00 106 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 RAPGEFL1Q9UHV5 662 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 ENPP5Q9UJA9 477 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 INTS6Q9UL03 887 aaKnown RBP13.68□□□□□ -0.22
COL6A1-207ENST00000612273 TESMINQ9Y4I5 508 aa13.68□□□□□ -0.22
COL6A1-207ENST00000612273 CLIC1O00299 241 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 SULT1C4O75897 302 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 PGLSO95336 258 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 CTSOP43234 321 aaPredicted RBP13.67□□□□□ -0.22
COL6A1-207ENST00000612273 CLK3P49761 638 aaKnown RBP13.67□□□□□ -0.22
COL6A1-207ENST00000612273 NKX2-5P52952 324 aaPredicted RBP13.67□□□□□ -0.22
COL6A1-207ENST00000612273 TP53BP2Q13625 1128 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 TRIM71Q2Q1W2 868 aaKnown RBP13.67□□□□□ -0.22
COL6A1-207ENST00000612273 UAP1L1Q3KQV9 507 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 USP39Q53GS9 565 aaKnown RBP13.67□□□□□ -0.22
COL6A1-207ENST00000612273 ZNF691Q5VV52 312 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 SCAMP4Q969E2 229 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 MUL1Q969V5 352 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 SH3GL1Q99961 368 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 HMG20AQ9NP66 347 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 KRT84Q9NSB2 600 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 TBCCD1Q9NVR7 557 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 SCN10AQ9Y5Y9 1956 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 FPGTO14772 594 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 BMP4P12644 408 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 COX7A2P14406 83 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 CCR7P32248 378 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 ABRQ12979 859 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 UTP15Q8TED0 518 aaKnown RBP13.67□□□□□ -0.22
COL6A1-207ENST00000612273 CHPT1Q8WUD6 406 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.67□□□□□ -0.22
COL6A1-207ENST00000612273 SERHLQ9NQF3 203 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 SCN3BQ9NY72 215 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 SH3BP4Q9P0V3 963 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 ERVK-11Q9UQG0 969 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 OARD1Q9Y530 152 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 PCDHB1Q9Y5F3 818 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 PCDHGA10Q9Y5H3 936 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 NLRC5Q86WI3 1866 aa13.67□□□□□ -0.22
COL6A1-207ENST00000612273 LINC00854A0A1B0GVQ3 168 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 HIST1H2AGP0C0S8 130 aaPredicted RBP13.66□□□□□ -0.22
COL6A1-207ENST00000612273 ACPPP15309 386 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 HIST1H2ADP20671 130 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 KIR3DL1P43629 444 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 ALDH7A1P49419 539 aaKnown RBP13.66□□□□□ -0.22
COL6A1-207ENST00000612273 CREMQ03060 361 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 BTG3Q14201 252 aaPredicted RBP13.66□□□□□ -0.22
COL6A1-207ENST00000612273 OR2T5Q6IEZ7 315 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 GPR149Q86SP6 731 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 OR2T29Q8NH02 315 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 SH3KBP1Q96B97 665 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 HIST1H2AHQ96KK5 128 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 ALPK1Q96QP1 1244 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 ZNF347Q96SE7 839 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 HIST1H2AJQ99878 128 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 H2AFJQ9BTM1 129 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 ATP13A3Q9H7F0 1226 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 GPN2Q9H9Y4 310 aaPredicted RBP13.66□□□□□ -0.22
COL6A1-207ENST00000612273 SIRT5Q9NXA8 310 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 RIMKLBQ9ULI2 386 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 DYTNA2CJ06 578 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 SAP18O00422 153 aaKnown RBP13.66□□□□□ -0.22
COL6A1-207ENST00000612273 CKMP06732 381 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 CD36P16671 472 aa13.66□□□□□ -0.22
COL6A1-207ENST00000612273 PBLDP30039 288 aaPredicted RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms