RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 TCF12Q99081 682 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 WDR54Q9H977 334 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 IL1RAPL1Q9NZN1 696 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 CRYL1Q9Y2S2 319 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 UBR5O95071 2799 aaPredicted RBP9.39□□□□□ -0.91
VRK3-216ENST00000599342 PCSK5Q92824 1860 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 SETXQ7Z333 2677 aaKnown RBP9.38□□□□□ -0.91
VRK3-216ENST00000599342 A0A0J9YVX5 310 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 TCRBV7S3A2A0A539 114 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 FITM1A5D6W6 292 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 KRT87PA6NCN2 255 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 TCP11X1B4DZS4 312 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 PRICKLE3O43900 615 aaPredicted RBP9.38□□□□□ -0.91
VRK3-216ENST00000599342 VPS26AO75436 327 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 EIF2S1P05198 315 aaKnown RBP9.38□□□□□ -0.91
VRK3-216ENST00000599342 ATP5DP30049 168 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 ADARP55265 1226 aaKnown RBP9.38□□□□□ -0.91
VRK3-216ENST00000599342 GPS1Q13098 491 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 TSTA3Q13630 321 aaPredicted RBP9.38□□□□□ -0.91
VRK3-216ENST00000599342 KCNJ11Q14654 390 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 RBBP7Q16576 425 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 NKG7Q16617 165 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 TUBB8Q3ZCM7 444 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 CCSMST1Q4G0I0 132 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 ANKRD20A4Q4UJ75 823 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 WASHC2DQ5SRD0 308 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 PRAMEF13Q5VWM6 474 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 ARMC3Q5W041 872 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 COX15Q7KZN9 410 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 METTL27Q8N6F8 245 aaPredicted RBP9.38□□□□□ -0.91
VRK3-216ENST00000599342 OR9A1PQ8NGU1 263 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 SSC4DQ8WTU2 575 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 LPGAT1Q92604 370 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 BIRC8Q96P09 236 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 PSMG3-AS1Q96PY0 264 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 SPSB2Q99619 263 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 ZFYVE21Q9BQ24 234 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 ACAT2Q9BWD1 397 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 SLC26A1Q9H2B4 701 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 CCDC68Q9H2F9 335 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 SOX17Q9H6I2 414 aaPredicted RBP9.38□□□□□ -0.91
VRK3-216ENST00000599342 ZNF552Q9H707 407 aaPredicted RBP9.38□□□□□ -0.91
VRK3-216ENST00000599342 FAM114A2Q9NRY5 505 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 SEMA3GQ9NS98 782 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 SLC22A11Q9NSA0 550 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 INTS10Q9NVR2 710 aaKnown RBP9.38□□□□□ -0.91
VRK3-216ENST00000599342 CUEDC1Q9NWM3 386 aaPredicted RBP9.38□□□□□ -0.91
VRK3-216ENST00000599342 CTSFQ9UBX1 484 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 ZC3H7BQ9UGR2 993 aaKnown RBP9.38□□□□□ -0.91
VRK3-216ENST00000599342 FBXL4Q9UKA2 621 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 MAU2Q9Y6X3 613 aa9.38□□□□□ -0.91
VRK3-216ENST00000599342 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 HYKKA2RU49 373 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 CTAGE9A4FU28 777 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 ZNF839A8K0R7 811 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 MASP2O00187 686 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 CTSVO60911 334 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 AVILO75366 819 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 USP1O94782 785 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 CCNDBP1O95273 360 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 MATN4O95460 622 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 ONECUT2O95948 504 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 KRT14P02533 472 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 CATP04040 527 aaKnown RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 PKMP14618 531 aaKnown RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 RPA3P35244 121 aaPredicted RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 OR1D4P47884 311 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 SOX8P57073 446 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 OCA2Q04671 838 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 MRPL49Q13405 166 aaKnown RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 THOC5Q13769 683 aaKnown RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 DHX34Q14147 1143 aaKnown RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 ELOAQ14241 798 aaKnown RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 FASTKQ14296 549 aaKnown RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 GBX1Q14549 363 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 KCTD19Q17RG1 926 aaPredicted RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 MUM1Q2TAK8 710 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 KLHL38Q2WGJ6 581 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 TTLL9Q3SXZ7 439 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 PLEKHN1Q494U1 663 aaPredicted RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 ZNF470Q6ECI4 717 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 FRMPD2BQ6IN97 320 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 NEPROQ6NW34 567 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 PRMT9Q6P2P2 845 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 IGFL3Q6UXB1 125 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 SHISA6Q6ZSJ9 500 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 RNF44Q7L0R7 432 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 CILP2Q8IUL8 1156 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 LRRC8AQ8IWT6 810 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 PRELID2Q8N945 189 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 OR2A1Q8NGT9 310 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 PRR7Q8TB68 274 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 SMPDL3AQ92484 453 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 ZNF669Q96BR6 464 aaPredicted RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 SNRNP40Q96DI7 357 aaKnown RBP9.37□□□□□ -0.91
VRK3-216ENST00000599342 CABS1Q96KC9 395 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 ZNF285Q96NJ3 590 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 DPH7Q9BTV6 452 aa9.37□□□□□ -0.91
VRK3-216ENST00000599342 CRB3Q9BUF7 120 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms