RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 E7ENX8 843 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 E7EQ34 232 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 WISP3O95389 354 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-213ENST00000598355 RECKO95980 971 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 NTRK1P04629 796 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 C8GP07360 202 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 ZNF37AP17032 561 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-213ENST00000598355 IMPA1P29218 277 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 GRIA3P42263 894 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 PNLIPRP1P54315 467 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 SLC7A5Q01650 507 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 GUCY2DQ02846 1103 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 TAP2Q03519 686 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 FIGLAQ6QHK4 219 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 ZSCAN1Q8NBB4 408 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 NOA1Q8NC60 698 aaKnown RBP15.51■□□□□ 0.07
TRIM28-213ENST00000598355 CT55Q8WUE5 264 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 STARD8Q92502 1023 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 ZUFSPQ96AP4 578 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 RNF31Q96EP0 1072 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 PDLIM5Q96HC4 596 aaKnown RBP15.51■□□□□ 0.07
TRIM28-213ENST00000598355 ANKMY1Q9P2S6 941 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 SERTAD3Q9UJW9 196 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 PLCL2Q9UPR0 1127 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 VWA7Q9Y334 891 aa15.51■□□□□ 0.07
TRIM28-213ENST00000598355 BOD1L1Q8NFC6 3051 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 IGKV1-8A0A0C4DH67 115 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 ZNF839A8K0R7 811 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 TK2O00142 265 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 SLC16A5O15375 505 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 ZBTB14O43829 449 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 CTSBP07858 339 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 CYP2A7P20853 494 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 DLSTP36957 453 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 CDC20Q12834 499 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 DNASE1L3Q13609 305 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 NAA25Q14CX7 972 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 SF1Q15637 639 aaKnown RBP15.5■□□□□ 0.07
TRIM28-213ENST00000598355 RHBDD2Q6NTF9 364 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 FAM198BQ6UWH4 519 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 TMEM207Q6UWW9 146 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 UBE2R2Q712K3 238 aaPredicted RBP15.5■□□□□ 0.07
TRIM28-213ENST00000598355 RNF44Q7L0R7 432 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 STRA8Q7Z7C7 330 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 GPATCH11Q8N954 259 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 MNS1Q8NEH6 495 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 KIF18AQ8NI77 898 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 ZNF592Q92610 1267 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 LINGO1Q96FE5 620 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 VPS39Q96JC1 886 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 ACTR5Q9H9F9 607 aaPredicted RBP15.5■□□□□ 0.07
TRIM28-213ENST00000598355 SLC6A20Q9NP91 592 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 EURLQ9NYK6 297 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 DMGDHQ9UI17 866 aaKnown RBP15.5■□□□□ 0.07
TRIM28-213ENST00000598355 KCND3Q9UK17 655 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 ADAMTS6Q9UKP5 1117 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 PDE10AQ9Y233 779 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 KLHL20Q9Y2M5 609 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 AP1M2Q9Y6Q5 423 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 CFAP46Q8IYW2 2715 aa15.5■□□□□ 0.07
TRIM28-213ENST00000598355 MED13Q9UHV7 2174 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 FAM95CA0A1B0GW59 222 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 CXorf49A8MYA2 514 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-213ENST00000598355 MEN1O00255 615 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 ZSCAN9O15535 394 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-213ENST00000598355 ZNF749O43361 778 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 CTSVO60911 334 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 OR2B3O76000 313 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 CAPN1P07384 714 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 HBQ1P09105 142 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 CCNYL3P0C7X3 344 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 MAGEA4P43358 317 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 PGGT1BP53609 377 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 IL2P60568 153 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 YBX1P67809 324 aaKnown RBP15.49■□□□□ 0.07
TRIM28-213ENST00000598355 PDAP1Q13442 181 aaKnown RBP15.49■□□□□ 0.07
TRIM28-213ENST00000598355 PHKG1Q16816 387 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 ZNF425Q6IV72 752 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 TLDC1Q6P9B6 456 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 SUSD1Q6UWL2 747 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 CAPN12Q6ZSI9 719 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 RELL1Q8IUW5 271 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 PALM2Q8IXS6 379 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 GPR135Q8IZ08 494 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 MYO1HQ8N1T3 1032 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 ANKRD7Q92527 254 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 TRIM44Q96DX7 344 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-213ENST00000598355 MIPEPQ99797 713 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 DPH2Q9BQC3 489 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-213ENST00000598355 PARVBQ9HBI1 364 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 POPDC3Q9HBV1 291 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 LRRC4CQ9HCJ2 640 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 STOX2Q9P2F5 926 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-213ENST00000598355 SRPK3Q9UPE1 567 aa15.49■□□□□ 0.07
TRIM28-213ENST00000598355 MRPS18BQ9Y676 258 aaKnown RBP15.49■□□□□ 0.07
TRIM28-213ENST00000598355 CTAGE15A4D2H0 777 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 FITM1A5D6W6 292 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 NRP2O60462 931 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 PIAS1O75925 651 aa15.48■□□□□ 0.07
TRIM28-213ENST00000598355 RAB40ALP0C0E4 278 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms