RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 CROTQ9UKG9 612 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 PADI1Q9ULC6 663 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 PDE10AQ9Y233 779 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 PCDHB3Q9Y5E6 796 aa13.33□□□□□ -0.28
UPF1-205ENST00000598209 FAM208BQ5VWN6 2430 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 E7ENX8 843 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 E7EQ34 232 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 SLC16A5O15375 505 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 C1QAP02745 245 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 ZNF37AP17032 561 aaPredicted RBP13.32□□□□□ -0.28
UPF1-205ENST00000598209 IMPA1P29218 277 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 CMPK1P30085 196 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 STX2P32856 288 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 RPA3P35244 121 aaPredicted RBP13.32□□□□□ -0.28
UPF1-205ENST00000598209 DLSTP36957 453 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 GRIA3P42263 894 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 TAS2R39P59534 338 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 TAP2Q03519 686 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 GPS2Q13227 327 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 SP140Q13342 867 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 ZNF460Q14592 562 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 KBTBD12Q3ZCT8 623 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 FCRL6Q6DN72 434 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 TMEM207Q6UWW9 146 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 CTAGE3PQ8IX95 158 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 GPR135Q8IZ08 494 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 SLC38A9Q8NBW4 561 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 FBF1Q8TES7 1133 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 IFT81Q8WYA0 676 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 ACAT2Q9BWD1 397 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 ACTR5Q9H9F9 607 aaPredicted RBP13.32□□□□□ -0.28
UPF1-205ENST00000598209 PARVBQ9HBI1 364 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 IL17BQ9UHF5 180 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 PLCL2Q9UPR0 1127 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 CCDC88CQ9P219 2028 aa13.32□□□□□ -0.28
UPF1-205ENST00000598209 TARM1B6A8C7 271 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 H3BMH7 237 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 ZNF749O43361 778 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 OR2B3O76000 313 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 F8A1P23610 371 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 GP5P40197 560 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 SLC12A2P55011 1212 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 YBX1P67809 324 aaKnown RBP13.31□□□□□ -0.28
UPF1-205ENST00000598209 PHKG1Q16816 387 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 CEP128Q6ZU80 1094 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 MCATQ8IVS2 390 aaKnown RBP13.31□□□□□ -0.28
UPF1-205ENST00000598209 CEP97Q8IW35 865 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 LRRC56Q8IYG6 542 aaPredicted RBP13.31□□□□□ -0.28
UPF1-205ENST00000598209 PPM1NQ8N819 430 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 CT55Q8WUE5 264 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 ZUFSPQ96AP4 578 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 CLIP3Q96DZ5 547 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 PDLIM5Q96HC4 596 aaKnown RBP13.31□□□□□ -0.28
UPF1-205ENST00000598209 SLC45A3Q96JT2 553 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 CCDC138Q96M89 665 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 LRFN5Q96NI6 719 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 RBBP8Q99708 897 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 SLC7A5P2Q9GIP4 190 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 SPRTNQ9H040 489 aaPredicted RBP13.31□□□□□ -0.28
UPF1-205ENST00000598209 AKIRIN1Q9H9L7 192 aaPredicted RBP13.31□□□□□ -0.28
UPF1-205ENST00000598209 SLC6A20Q9NP91 592 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 MRPS30Q9NP92 439 aaKnown RBP13.31□□□□□ -0.28
UPF1-205ENST00000598209 ABCF3Q9NUQ8 709 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 IRAK4Q9NWZ3 460 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 EURLQ9NYK6 297 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 STOX2Q9P2F5 926 aaPredicted RBP13.31□□□□□ -0.28
UPF1-205ENST00000598209 TAC3Q9UHF0 121 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 MTO1Q9Y2Z2 717 aaKnown RBP13.31□□□□□ -0.28
UPF1-205ENST00000598209 KLK4Q9Y5K2 254 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 ITPR1Q14643 2758 aa13.31□□□□□ -0.28
UPF1-205ENST00000598209 PABPN1LA6NDY0 278 aaKnown RBP13.3□□□□□ -0.28
UPF1-205ENST00000598209 ZNF891A8MT65 544 aaPredicted RBP13.3□□□□□ -0.28
UPF1-205ENST00000598209 MEN1O00255 615 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 TERTO14746 1132 aaKnown RBP13.3□□□□□ -0.28
UPF1-205ENST00000598209 CCNDBP1O95273 360 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 KLK3P07288 261 aaPredicted RBP13.3□□□□□ -0.28
UPF1-205ENST00000598209 CTSBP07858 339 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 HBQ1P09105 142 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 HIST1H2AGP0C0S8 130 aaPredicted RBP13.3□□□□□ -0.28
UPF1-205ENST00000598209 TCN2P20062 427 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 HIST1H2ADP20671 130 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 RORAP35398 523 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 CYP4F2P78329 520 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 POU4F1Q01851 419 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 RHDQ02161 417 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 DNASE1L3Q13609 305 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 NAA25Q14CX7 972 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 EFTUD2Q15029 972 aaKnown RBP eCLIP13.3□□□□□ -0.283e-6■■■□□ 18.5
UPF1-205ENST00000598209 ZC3H12BQ5HYM0 836 aaKnown RBP13.3□□□□□ -0.28
UPF1-205ENST00000598209 THEMIS2Q5TEJ8 643 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 ICE2Q659A1 982 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 TLDC1Q6P9B6 456 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 FAM199XQ6PEV8 388 aaPredicted RBP13.3□□□□□ -0.28
UPF1-205ENST00000598209 MBOAT1Q6ZNC8 495 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 DSELQ8IZU8 1212 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 NKAPQ8N5F7 415 aaKnown RBP13.3□□□□□ -0.28
UPF1-205ENST00000598209 ZNF655Q8N720 491 aaPredicted RBP13.3□□□□□ -0.28
UPF1-205ENST00000598209 STARD8Q92502 1023 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 MR1Q95460 341 aa13.3□□□□□ -0.28
UPF1-205ENST00000598209 HIST1H2AHQ96KK5 128 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms