RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 IRF8Q02556 426 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 ELP6Q0PNE2 266 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 APOFQ13790 326 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 ELAVL3Q14576 367 aaKnown RBP19.12■□□□□ 0.65
CLIP3-206ENST00000593074 LRRK1Q38SD2 2015 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 BCL7AQ4VC05 210 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 TMEM220Q6QAJ8 160 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 ZNF765Q7L2R6 523 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 RIMKLAQ8IXN7 391 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 CPA6Q8N4T0 437 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 TERB1Q8NA31 727 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 TNIP2Q8NFZ5 429 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 TFAP2CQ92754 450 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 PAIP1Q9H074 479 aaKnown RBP19.12■□□□□ 0.65
CLIP3-206ENST00000593074 EPB41L1Q9H4G0 881 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 GORASP2Q9H8Y8 452 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 SERHLQ9NQF3 203 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 MSRAQ9UJ68 235 aa19.12■□□□□ 0.65
CLIP3-206ENST00000593074 KIAA1549LQ6ZVL6 1849 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 PDLIM1O00151 329 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 NPC1O15118 1278 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 HOXB9P17482 250 aaPredicted RBP19.11■□□□□ 0.65
CLIP3-206ENST00000593074 AGTRAPQ6RW13 159 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 VITQ6UXI7 678 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 WDR20Q8TBZ3 569 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 CSGALNACT1Q8TDX6 532 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 TSSK3Q96PN8 268 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 FAM129BQ96TA1 746 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 KCNH6Q9H252 994 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 TMEM245Q9H330 911 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 GULP1Q9UBP9 304 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 CDH7Q9ULB5 785 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 PADI4Q9UM07 663 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 PPT2Q9UMR5 302 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 COQ6Q9Y2Z9 468 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 C2orf16Q68DN1 1984 aa19.11■□□□□ 0.65
CLIP3-206ENST00000593074 ATG2AQ2TAZ0 1938 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 A0A096LPI6 279 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 E7EQ34 232 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 PGM3O95394 542 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 CLPTM1O96005 669 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 LDLRP01130 860 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 S100A3P33764 101 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 BDKRB1P46663 353 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 RUNX3Q13761 415 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 CCSMST1Q4G0I0 132 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 IYDQ6PHW0 289 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 ISLR2Q6UXK2 745 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 DNAJC14Q6Y2X3 702 aaPredicted RBP19.1■□□□□ 0.65
CLIP3-206ENST00000593074 SFTPA1Q8IWL2 248 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 OR56A3Q8NH54 315 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 OR10A6Q8NH74 314 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 FOXJ1Q92949 421 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 NUS1Q96E22 293 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 TSC22D3Q99576 134 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 THUMPD3Q9BV44 507 aaKnown RBP19.1■□□□□ 0.65
CLIP3-206ENST00000593074 CHID1Q9BWS9 393 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 OSBPL6Q9BZF3 934 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 ZCCHC2Q9C0B9 1178 aaKnown RBP19.1■□□□□ 0.65
CLIP3-206ENST00000593074 ZNF639Q9UID6 485 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.1■□□□□ 0.65
CLIP3-206ENST00000593074 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.1■□□□□ 0.65
CLIP3-206ENST00000593074 EPOPA6NHQ4 379 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 LILRB5O75023 590 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 TFAP2AP05549 437 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 IMPA1P29218 277 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 HNRNPFP52597 415 aaKnown RBP19.1■□□□□ 0.65
CLIP3-206ENST00000593074 PYCR3Q53H96 274 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 XKR6Q5GH73 641 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 ATG9BQ674R7 924 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 GRHL2Q6ISB3 625 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 MSANTD1Q6ZTZ1 278 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 YAF2Q8IY57 180 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 OR52E4Q8NGH9 312 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 SUSD6Q92537 303 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 PPP1R16AQ96I34 528 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 APOLD1Q96LR9 279 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 OR4K3Q96R72 315 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 SEPHS2Q99611 448 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 PRPF18Q99633 342 aaKnown RBP19.1■□□□□ 0.65
CLIP3-206ENST00000593074 CPPED1Q9BRF8 314 aaPredicted RBP19.1■□□□□ 0.65
CLIP3-206ENST00000593074 KAT8Q9H7Z6 458 aaKnown RBP19.1■□□□□ 0.65
CLIP3-206ENST00000593074 RMND5AQ9H871 391 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 SLC6A13Q9NSD5 602 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 PCDHB14Q9Y5E9 798 aa19.1■□□□□ 0.65
CLIP3-206ENST00000593074 KIF26AQ9ULI4 1882 aaPredicted RBP19.09■□□□□ 0.65
CLIP3-206ENST00000593074 SMIM31A0A1B0GVY4 71 aa19.09■□□□□ 0.65
CLIP3-206ENST00000593074 H0YIV9 168 aa19.09■□□□□ 0.65
CLIP3-206ENST00000593074 RECQL5O94762 991 aaPredicted RBP19.09■□□□□ 0.65
CLIP3-206ENST00000593074 SLC16A8O95907 504 aa19.09■□□□□ 0.65
CLIP3-206ENST00000593074 ADRB3P13945 408 aa19.09■□□□□ 0.65
CLIP3-206ENST00000593074 PTPN6P29350 595 aa19.09■□□□□ 0.65
CLIP3-206ENST00000593074 PDHA2P29803 388 aa19.09■□□□□ 0.65
CLIP3-206ENST00000593074 OPRD1P41143 372 aa19.09■□□□□ 0.65
CLIP3-206ENST00000593074 RPL5P46777 297 aaKnown RBP19.09■□□□□ 0.65
CLIP3-206ENST00000593074 PLOD1Q02809 727 aaPredicted RBP19.09■□□□□ 0.65
CLIP3-206ENST00000593074 FCHO2Q0JRZ9 810 aa19.09■□□□□ 0.65
CLIP3-206ENST00000593074 NAE1Q13564 534 aa19.09■□□□□ 0.65
CLIP3-206ENST00000593074 GTDC1Q4AE62 458 aa19.09■□□□□ 0.65
CLIP3-206ENST00000593074 NAIF1Q69YI7 327 aaPredicted RBP19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms