RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 HELZP42694 1942 aaKnown RBP9.8□□□□□ -0.84
VPS53-220ENST00000576149 TSPAN11A1L157 253 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 LEFTY1O75610 366 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 RFPL2O75678 378 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 CST1P01037 141 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 FTH1P02794 183 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 TIMP2P16035 220 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 AMD1P17707 334 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 ETV3P41162 512 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 HNRNPFP52597 415 aaKnown RBP9.8□□□□□ -0.84
VPS53-220ENST00000576149 ERVFC1P60507 584 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 TAGLNQ01995 201 aaKnown RBP9.8□□□□□ -0.84
VPS53-220ENST00000576149 CHIT1Q13231 466 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 ZIK1Q3SY52 487 aaPredicted RBP9.8□□□□□ -0.84
VPS53-220ENST00000576149 ARSIQ5FYB1 569 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 LY6G5CQ5SRR4 150 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 CCNYL2Q5T2Q4 361 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 HENMT1Q5T8I9 393 aaKnown RBP9.8□□□□□ -0.84
VPS53-220ENST00000576149 AP1ARQ63HQ0 302 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 OTOP2Q7RTS6 562 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 CYP2U1Q7Z449 544 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 ANKRD46Q86W74 232 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 CLEC4FQ8N1N0 589 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 TRAM1L1Q8N609 369 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 FAM120BQ96EK7 910 aaKnown RBP9.8□□□□□ -0.84
VPS53-220ENST00000576149 AURKBQ96GD4 344 aaPredicted RBP9.8□□□□□ -0.84
VPS53-220ENST00000576149 EGLN2Q96KS0 407 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 FCRL1Q96LA6 429 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 MRGPRX3Q96LB0 322 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 RDH12Q96NR8 316 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 MUS81Q96NY9 551 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 TCF25Q9BQ70 676 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 FAM83CQ9BQN1 747 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 ATG10Q9H0Y0 220 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 MAGIXQ9H6Y5 334 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 PCDH12Q9NPG4 1184 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 NFKBIL1Q9UBC1 381 aaPredicted RBP9.8□□□□□ -0.84
VPS53-220ENST00000576149 UTS2RQ9UKP6 389 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 IRAK3Q9Y616 596 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 A0A1B0GVG6 124 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 HIDE1A8MVS5 230 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 FADS2P1A8MWK0 482 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 TTC34A8MYJ7 566 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 UPK3BL1B0FP48 263 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 UPK3BL2E5RIL1 263 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 ZNF701M0R085 212 aaPredicted RBP9.79□□□□□ -0.84
VPS53-220ENST00000576149 WNT9AO14904 365 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 PER2O15055 1255 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 UGDHO60701 494 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 FGF19O95750 216 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 GSNP06396 782 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 GSTM1P09488 218 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 PTPN2P17706 415 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 IL1RNP18510 177 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 POLR2EP19388 210 aaKnown RBP9.79□□□□□ -0.84
VPS53-220ENST00000576149 HALP42357 657 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 CDKN2CP42773 168 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 HTRA4P83105 476 aaPredicted RBP9.79□□□□□ -0.84
VPS53-220ENST00000576149 GSTM4Q03013 218 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 ZNF33BQ06732 778 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 LRRC26Q2I0M4 334 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 PGS1Q32NB8 556 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 ARHGAP15Q53QZ3 475 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 LIPJQ5W064 366 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 NOXRED1Q6NXP6 359 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 MSANTD1Q6ZTZ1 278 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 GPR180Q86V85 440 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 SVOPLQ8N434 492 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 NETO1Q8TDF5 533 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 CSGALNACT1Q8TDX6 532 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 CLP1Q92989 425 aaKnown RBP9.79□□□□□ -0.84
VPS53-220ENST00000576149 POP5Q969H6 163 aaKnown RBP9.79□□□□□ -0.84
VPS53-220ENST00000576149 NCLNQ969V3 563 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 SDCCAG3Q96C92 435 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 TIFAQ96CG3 184 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 REXO5Q96IC2 774 aaKnown RBP9.79□□□□□ -0.84
VPS53-220ENST00000576149 APOLD1Q96LR9 279 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 ZSCAN5AQ9BUG6 496 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 RIOK2Q9BVS4 552 aaKnown RBP9.79□□□□□ -0.84
VPS53-220ENST00000576149 OSBPL10Q9BXB5 764 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 TIMMDC1Q9NPL8 285 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 USE1Q9NZ43 259 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 TBC1D14Q9P2M4 693 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 MYOFQ9NZM1 2061 aa9.79□□□□□ -0.84
VPS53-220ENST00000576149 OR2AG2A6NM03 316 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 QSOX1O00391 747 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 RFXANKO14593 260 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 PSIP1O75475 530 aaKnown RBP9.78□□□□□ -0.84
VPS53-220ENST00000576149 LRATO95237 230 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 B3GALT4O96024 378 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 CTSLP07711 333 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 RHOP08100 348 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 HLCSP50747 726 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 IST1P53990 364 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 PPP2R2BQ00005 443 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 ABHD18Q0P651 414 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 MTAPQ13126 283 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 MYBPC3Q14896 1274 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 ZNF77Q15935 545 aa9.78□□□□□ -0.84
VPS53-220ENST00000576149 ZNF648Q5T619 568 aaPredicted RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms