RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ATP8B4Q8TF62 1192 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 NPRL2Q8WTW4 380 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 SKA1Q96BD8 255 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 PRICKLE1Q96MT3 831 aaPredicted RBP2.38□□□□□ -2.03
VPS35-207ENST00000568191 SPAG5Q96R06 1193 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 CDRT15Q96T59 188 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 LGMNQ99538 433 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 LPAR4Q99677 370 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 TEX12Q9BXU0 123 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 OPA3Q9H6K4 179 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 MTHFD2LQ9H903 347 aaPredicted RBP2.38□□□□□ -2.03
VPS35-207ENST00000568191 SUCLA2Q9P2R7 463 aaPredicted RBP2.38□□□□□ -2.03
VPS35-207ENST00000568191 TBC1D29Q9UFV1 150 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 PPP2R2CQ9Y2T4 447 aa2.38□□□□□ -2.03
VPS35-207ENST00000568191 A0A1W2PNU3 283 aaPredicted RBP2.37□□□□□ -2.03
VPS35-207ENST00000568191 A0A1W2PQ09 198 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 A8MXK9 166 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 KLLNB2CW77 178 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 PAPSS1O43252 624 aaPredicted RBP2.37□□□□□ -2.03
VPS35-207ENST00000568191 CREG1O75629 220 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 TRUB2O95900 331 aaKnown RBP2.37□□□□□ -2.03
VPS35-207ENST00000568191 OXTRP30559 389 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 FCHO2Q0JRZ9 810 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 LMOD3Q0VAK6 560 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 TAF10Q12962 218 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 LY6DQ14210 128 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 ZNF74Q16587 644 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 C15orf32Q32M92 178 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 CES4AQ5XG92 561 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 FAM205BPQ63HN1 556 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 C4orf50Q6ZRC1 276 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 SZRD1Q7Z422 152 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 CEP57Q86XR8 500 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 LINC00346Q8IVM7 164 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 CEP57L1Q8IYX8 460 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 C17orf47Q8NEP4 570 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 OR11H4Q8NGC9 324 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 C9orf43Q8TAL5 461 aaPredicted RBP2.37□□□□□ -2.03
VPS35-207ENST00000568191 GATAD1Q8WUU5 269 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 ATL1Q8WXF7 558 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 PAFAH2Q99487 392 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 KRTAP4-3Q9BYR4 195 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 HOXD1Q9GZZ0 328 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 GHITMQ9H3K2 345 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 TBC1D17Q9HA65 648 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 WSB2Q9NYS7 404 aaPredicted RBP2.37□□□□□ -2.03
VPS35-207ENST00000568191 ZNF215Q9UL58 517 aaPredicted RBP2.37□□□□□ -2.03
VPS35-207ENST00000568191 WIPI2Q9Y4P8 454 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 SELENOKQ9Y6D0 94 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 ITIH6Q6UXX5 1313 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 PCDH11YQ9BZA8 1340 aa2.37□□□□□ -2.03
VPS35-207ENST00000568191 IQCMA0A1B0GVH7 501 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 ACOD1A6NK06 481 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 O00370 1275 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 ARPC2O15144 300 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 BCL2L11O43521 198 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 WDHD1O75717 1129 aaPredicted RBP2.36□□□□□ -2.03
VPS35-207ENST00000568191 KRT33AO76009 404 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 POP4O95707 220 aaKnown RBP2.36□□□□□ -2.03
VPS35-207ENST00000568191 DARSP14868 501 aaKnown RBP2.36□□□□□ -2.03
VPS35-207ENST00000568191 RPL35AP18077 110 aaKnown RBP2.36□□□□□ -2.03
VPS35-207ENST00000568191 JAK1P23458 1154 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 LIMK2P53671 638 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 CLNS1AP54105 237 aaKnown RBP2.36□□□□□ -2.03
VPS35-207ENST00000568191 MS4A18Q3C1V0 323 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 SLC25A53Q5H9E4 307 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 OLFML2AQ68BL7 652 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 UGT3A1Q6NUS8 523 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 TEX38Q6PEX7 206 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 LCLAT1Q6UWP7 414 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 ZFAND4Q86XD8 727 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 ZNF584Q8IVC4 421 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 LGI2Q8N0V4 545 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 C17orf53Q8N3J3 647 aaPredicted RBP2.36□□□□□ -2.03
VPS35-207ENST00000568191 GUF1Q8N442 669 aaKnown RBP2.36□□□□□ -2.03
VPS35-207ENST00000568191 TTC30BQ8N4P2 665 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.36□□□□□ -2.03
VPS35-207ENST00000568191 POC5Q8NA72 575 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 SLC37A3Q8NCC5 494 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 APOBEC4Q8WW27 367 aaKnown RBP2.36□□□□□ -2.03
VPS35-207ENST00000568191 SYN2Q92777 582 aaPredicted RBP2.36□□□□□ -2.03
VPS35-207ENST00000568191 JAKMIP2Q96AA8 810 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 SPACA9Q96E40 222 aaPredicted RBP2.36□□□□□ -2.03
VPS35-207ENST00000568191 HEXA-AS1Q9H8Q6 139 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 ZNF69Q9UC07 566 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 ADD3Q9UEY8 706 aaKnown RBP2.36□□□□□ -2.03
VPS35-207ENST00000568191 LNPEPQ9UIQ6 1025 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 CHKBQ9Y259 395 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 PTRH2Q9Y3E5 179 aaKnown RBP2.36□□□□□ -2.03
VPS35-207ENST00000568191 ADAMTS9Q9P2N4 1935 aa2.36□□□□□ -2.03
VPS35-207ENST00000568191 A0A1W2PPR1 153 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 A0A1W2PR80 420 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 FEZF1A0PJY2 475 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 FSD2A1L4K1 749 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 OR2A25A4D2G3 310 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 A6NCN8 305 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 TRIM49BA6NDI0 452 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 ADAMDEC1O15204 470 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 CEACAM4O75871 244 aa2.35□□□□□ -2.03
VPS35-207ENST00000568191 PDHA2P29803 388 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms