RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 UGDHO60701 494 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 LILRB5O75023 590 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 RECQL5O94762 991 aaPredicted RBP19.68■□□□□ 0.74
CLN3-230ENST00000568076 LRATO95237 230 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 NFATC1O95644 943 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 SLC16A8O95907 504 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 PTPN6P29350 595 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 LBX1P52954 281 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 POLE2P56282 527 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 GPM6BQ13491 265 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 DOC2AQ14183 400 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 LRIF1Q5T3J3 769 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 TMTC4Q5T4D3 741 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 NOXRED1Q6NXP6 359 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 C10orf111Q8N326 155 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 FAM86B1Q8N7N1 296 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 FIG4Q92562 907 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 TESCQ96BS2 214 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 MED8Q96G25 268 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 FCRL1Q96LA6 429 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 FAM129BQ96TA1 746 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 INPP5KQ9BT40 448 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 MRPS26Q9BYN8 205 aaKnown RBP19.68■□□□□ 0.74
CLN3-230ENST00000568076 KCNH6Q9H252 994 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 GORASP2Q9H8Y8 452 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 DEC1Q9P2X7 70 aa19.68■□□□□ 0.74
CLN3-230ENST00000568076 LRRK1Q38SD2 2015 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 EDDM13A0A1B0GTR0 161 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 HEPACAM2A8MVW5 462 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 EI24O14681 340 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 OR6B1O95007 311 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 CATP04040 527 aaKnown RBP19.67■□□□□ 0.74
CLN3-230ENST00000568076 ATP6V1B1P15313 513 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 S100A3P33764 101 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 CNPY1Q3B7I2 92 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 XKR5Q6UX68 686 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 ANKRD46Q86W74 232 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 KLHDC8AQ8IYD2 350 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 OR8D1Q8WZ84 308 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 AURKBQ96GD4 344 aaPredicted RBP19.67■□□□□ 0.74
CLN3-230ENST00000568076 MAGEB10Q96LZ2 347 aaPredicted RBP19.67■□□□□ 0.74
CLN3-230ENST00000568076 TBCDQ9BTW9 1192 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 EBPLQ9BY08 206 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 KAT8Q9H7Z6 458 aaKnown RBP19.67■□□□□ 0.74
CLN3-230ENST00000568076 OLAHQ9NV23 265 aa19.67■□□□□ 0.74
CLN3-230ENST00000568076 LDLRP01130 860 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 GNAO1P09471 354 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 C6P13671 934 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 ACPPP15309 386 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 MAPK1P28482 360 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 CDKN2CP42773 168 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 RPL5P46777 297 aaKnown RBP19.66■□□□□ 0.74
CLN3-230ENST00000568076 ZNF234Q14588 700 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 PDE12Q6L8Q7 609 aaKnown RBP19.66■□□□□ 0.74
CLN3-230ENST00000568076 AADATQ8N5Z0 425 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 OR56A3Q8NH54 315 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 ATL1Q8WXF7 558 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 FGF13Q92913 245 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 SMARCD2Q92925 531 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 GFM2Q969S9 779 aaKnown RBP19.66■□□□□ 0.74
CLN3-230ENST00000568076 NUS1Q96E22 293 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 MTERF1Q99551 399 aaKnown RBP19.66■□□□□ 0.74
CLN3-230ENST00000568076 CPPED1Q9BRF8 314 aaPredicted RBP19.66■□□□□ 0.74
CLN3-230ENST00000568076 EPHX3Q9H6B9 360 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 NTN4Q9HB63 628 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 GPRC5BQ9NZH0 403 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 ZNF639Q9UID6 485 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 A0A096LPI6 279 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 MMP20O60882 483 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 ERN1O75460 977 aaKnown RBP19.66■□□□□ 0.74
CLN3-230ENST00000568076 GSNP06396 782 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 ADRB3P13945 408 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 GZMMP51124 257 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 CSTF3Q12996 717 aaKnown RBP19.66■□□□□ 0.74
CLN3-230ENST00000568076 PGS1Q32NB8 556 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 ADNP2Q6IQ32 1131 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 ERLEC1Q96DZ1 483 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 SH3GL1Q99961 368 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 ADI1Q9BV57 179 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 OR2AG1Q9H205 316 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 TMEM245Q9H330 911 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 SPATA6Q9NWH7 488 aaPredicted RBP19.66■□□□□ 0.74
CLN3-230ENST00000568076 INVSQ9Y283 1065 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 CROCCQ5TZA2 2017 aa19.66■□□□□ 0.74
CLN3-230ENST00000568076 C2orf16Q68DN1 1984 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 ELOVL7A1L3X0 281 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 UPK1AO00322 258 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 RAP2AP10114 183 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 MERTKQ12866 999 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 ELAVL3Q14576 367 aaKnown RBP19.65■□□□□ 0.74
CLN3-230ENST00000568076 NKG7Q16617 165 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 BCL7AQ4VC05 210 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 GRHL2Q6ISB3 625 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 TBPL2Q6SJ96 375 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 ENPP6Q6UWR7 440 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 GCNT7Q6ZNI0 430 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 CALHM3Q86XJ0 350 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 FAM47BQ8NA70 645 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 DNAJB8Q8NHS0 232 aa19.65■□□□□ 0.74
CLN3-230ENST00000568076 VPS50Q96JG6 964 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms