RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PDGFAP04085 211 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 PIM1P11309 404 aaPredicted RBP19.88■□□□□ 0.77
CLN3-219ENST00000565778 CMPK1P30085 196 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 VSX2P58304 361 aaPredicted RBP19.88■□□□□ 0.77
CLN3-219ENST00000565778 GNG11P61952 73 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 CUL1Q13616 776 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 ATP1A4Q13733 1029 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 GRM7Q14831 915 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 IGFBP7Q16270 282 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 FAM214AQ32MH5 1076 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 SUSD1Q6UWL2 747 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 TTC29Q8NA56 475 aaPredicted RBP19.88■□□□□ 0.77
CLN3-219ENST00000565778 KCNJ9Q92806 393 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 INPP5DQ92835 1189 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 PTERQ96BW5 349 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 CAPZA3Q96KX2 299 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 IP6K3Q96PC2 410 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 FAM167BQ9BTA0 163 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 CUTCQ9NTM9 273 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 KLHL42Q9P2K6 505 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 G3BP2Q9UN86 482 aaKnown RBP19.88■□□□□ 0.77
CLN3-219ENST00000565778 DHRS7Q9Y394 339 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 PCDHGA9Q9Y5G4 932 aaKnown RBP19.88■□□□□ 0.77
CLN3-219ENST00000565778 BSNQ9UPA5 3926 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 A0A1B0GX78 115 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 USP27XA6NNY8 438 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 PEX12O00623 359 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 CTSVO60911 334 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 PGAM1P18669 254 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 MCM3P25205 808 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 RPA3P35244 121 aaPredicted RBP19.87■□□□□ 0.77
CLN3-219ENST00000565778 PTK6Q13882 451 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 EEF1AKMT2Q5JPI9 291 aaKnown RBP19.87■□□□□ 0.77
CLN3-219ENST00000565778 WASHC2DQ5SRD0 308 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 NEK10Q6ZWH5 1172 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 KCNMB4Q86W47 210 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 OR2Y1Q8NGV0 311 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 GABPB2Q8TAK5 448 aaPredicted RBP19.87■□□□□ 0.77
CLN3-219ENST00000565778 SMPDL3AQ92484 453 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 PKP4Q99569 1192 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 ZC3H7BQ9UGR2 993 aaKnown RBP19.87■□□□□ 0.77
CLN3-219ENST00000565778 PCYOX1Q9UHG3 505 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 COMMD10Q9Y6G5 202 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 TENM4Q6N022 2769 aa19.87■□□□□ 0.77
CLN3-219ENST00000565778 A0A0J9YVX5 310 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 ZNF839A8K0R7 811 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 DSCR3O14972 297 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 ZBTB14O43829 449 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 SYF2O95926 243 aaKnown RBP19.86■□□□□ 0.77
CLN3-219ENST00000565778 EIF2S1P05198 315 aaKnown RBP19.86■□□□□ 0.77
CLN3-219ENST00000565778 MPC1LP0DKB6 136 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 HSD17B2P37059 387 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 YBX1P67809 324 aaKnown RBP19.86■□□□□ 0.77
CLN3-219ENST00000565778 MPP1Q00013 466 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 DHX9Q08211 1270 aaKnown RBP19.86■□□□□ 0.77
CLN3-219ENST00000565778 ARHGAP19Q14CB8 494 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 NAA25Q14CX7 972 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 YOD1Q5VVQ6 348 aaPredicted RBP19.86■□□□□ 0.77
CLN3-219ENST00000565778 MRPL14Q6P1L8 145 aaKnown RBP19.86■□□□□ 0.77
CLN3-219ENST00000565778 OVCH1Q7RTY7 1134 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 SPNS2Q8IVW8 549 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 KLHL7Q8IXQ5 586 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 FDCSPQ8NFU4 85 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 ASB11Q8WXH4 323 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 SLCO2A1Q92959 643 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 FER1L6-AS2Q96M78 137 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 GPR21Q99679 349 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 EBNA1BP2Q99848 306 aaKnown RBP19.86■□□□□ 0.77
CLN3-219ENST00000565778 DPH7Q9BTV6 452 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 MLXIPLQ9NP71 852 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 MRPS30Q9NP92 439 aaKnown RBP19.86■□□□□ 0.77
CLN3-219ENST00000565778 SLC22A11Q9NSA0 550 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 ZNF451Q9Y4E5 1061 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 KLK4Q9Y5K2 254 aa19.86■□□□□ 0.77
CLN3-219ENST00000565778 SEC16AO15027 2179 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 MYO1CO00159 1063 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 CNOT3O75175 753 aaKnown RBP19.85■□□□□ 0.77
CLN3-219ENST00000565778 VPS26AO75436 327 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 TTC4O95801 387 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 ERVK-10P10266 1014 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 ENO3P13929 434 aaPredicted RBP19.85■□□□□ 0.77
CLN3-219ENST00000565778 GCGRP47871 477 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 PNLIPRP1P54315 467 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 FOXL2P58012 376 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 BBS9Q3SYG4 887 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 FRMPD2BQ6IN97 320 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 FBXO42Q6P3S6 717 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 CYHR1Q6ZMK1 362 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 GIMAP7Q8NHV1 300 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 ZNF285Q96NJ3 590 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 AARSD1Q9BTE6 412 aaKnown RBP19.85■□□□□ 0.77
CLN3-219ENST00000565778 ABCF3Q9NUQ8 709 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 MED16Q9Y2X0 877 aa19.85■□□□□ 0.77
CLN3-219ENST00000565778 LOC105369274A0A096LPK9 316 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 LOC102723532A0A0G2JNH3 316 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 HYKKA2RU49 373 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 FITM1A5D6W6 292 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 BANF1O75531 89 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 CEACAM4O75871 244 aa19.84■□□□□ 0.77
CLN3-219ENST00000565778 IGHEP01854 428 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms